View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11052_low_9 (Length: 362)
Name: NF11052_low_9
Description: NF11052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11052_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 4 - 346
Target Start/End: Complemental strand, 35491194 - 35490852
Alignment:
| Q |
4 |
tgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491194 |
tgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatca |
35491095 |
T |
|
| Q |
104 |
ctcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491094 |
ctcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactga |
35490995 |
T |
|
| Q |
204 |
ctttaccagcttttggtccatgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacacc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490994 |
ctttaccagcttttggtccatgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacacc |
35490895 |
T |
|
| Q |
304 |
attaggaaaagcaaggcctcttaataagaccttcacttctttg |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490894 |
attaggaaaagcaaggcctcttaataagaccttcacttctttg |
35490852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 345
Target Start/End: Complemental strand, 35503906 - 35503688
Alignment:
| Q |
127 |
caaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtccatga |
226 |
Q |
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||||||||||||||| || || | |||||||||||||| |||||| ||||| ||||||||| || |||||||| ||||| ||||| ||||||||| || |
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| T |
35503906 |
caaagcaacccaaaattgcccttctgaatttctccttacattgtctggaaagcctggaagaacagcaaaagtatcgacttggccagcatttggtccacga |
35503807 |
T |
|
| Q |
227 |
agccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctctta |
326 |
Q |
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|
|||||||||| ||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
35503806 |
agccaaagcctcagaatcttgcaagtcgaagtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccattgggaaaagcaaggccactta |
35503707 |
T |
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| Q |
327 |
ataagaccttcacttcttt |
345 |
Q |
| |
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||||||| ||||||||||| |
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| T |
35503706 |
ataagactttcacttcttt |
35503688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 122 - 345
Target Start/End: Complemental strand, 35512543 - 35512320
Alignment:
| Q |
122 |
gaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtc |
221 |
Q |
| |
|
|||| ||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||| || |||||||| || || ||| | || |||| |
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| T |
35512543 |
gaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggccaacattaggtc |
35512444 |
T |
|
| Q |
222 |
catgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcc |
321 |
Q |
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||| ||||||||||| ||||| |||| | | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
35512443 |
cattaagccaaagcctcagaatcctgctaatcgaggtttcggctaccagaagaaatgaaccatctttgcttaaagcaacaccattgggaaaaaaaaggcc |
35512344 |
T |
|
| Q |
322 |
tcttaataagaccttcacttcttt |
345 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
35512343 |
acttaataagacctttacttcttt |
35512320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 35497412 - 35497344
Alignment:
| Q |
4 |
tgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatc |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35497412 |
tgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatc |
35497344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 35504139 - 35504028
Alignment:
| Q |
8 |
atccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatcactca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||| ||||| |||||||| ||| ||||||| | | |||||||||||| ||||||||||||| |
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| T |
35504139 |
atccaaagttttccatctttctcttcaatttcactgatgaacttcaaggtcttcccttcacaatcttccaggacttctaatatttccccttcatcactca |
35504040 |
T |
|
| Q |
108 |
gctttacagctg |
119 |
Q |
| |
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|||||| ||||| |
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| T |
35504039 |
gctttatagctg |
35504028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 35512771 - 35512660
Alignment:
| Q |
8 |
atccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatcactca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| |||||| | |||||| |||||| ||||||||||||| |
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| T |
35512771 |
atccaaagttttccatctttctcttccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttccccttcatcactca |
35512672 |
T |
|
| Q |
108 |
gctttacagctg |
119 |
Q |
| |
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|||||| ||||| |
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| T |
35512671 |
gctttatagctg |
35512660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 81 - 345
Target Start/End: Complemental strand, 40161624 - 40161360
Alignment:
| Q |
81 |
tttctaatatttctccttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacc |
180 |
Q |
| |
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||||||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||||||| ||| |||| |
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| T |
40161624 |
tttctaatatttccccttcatcactcaactttatagctgcattatgcaaagcaacccaaaactgcccatctgaatttctccttatattgtccggataacc |
40161525 |
T |
|
| Q |
181 |
tggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaa |
280 |
Q |
| |
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||||||| | |||||||| |||||| |||||| || || |||||||||||||| |||||||| | | || | ||||||||| |||| ||||| ||| || |
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| T |
40161524 |
tggaagaacggcaaaagtattgacttgaccagcattagggccatgaagccaaagtcgaagaatccggaaagtcgaggtttcacctactagaaggaataaa |
40161425 |
T |
|
| Q |
281 |
ccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttcttt |
345 |
Q |
| |
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|| |||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||| |
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|
| T |
40161424 |
ccgtctttgcttaaacaaacaccattaggataattaaggccacttaataagaccttcacttcttt |
40161360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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