View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11053_low_2 (Length: 358)
Name: NF11053_low_2
Description: NF11053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11053_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 38279210 - 38278885
Alignment:
| Q |
18 |
acagttttcggtcttgaacaagcagttggcaatcccaacactttgctcttccacaaatgaatacttggtgaatggaatgagtttgtctgnnnnnnnctgc |
117 |
Q |
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| T |
38279210 |
acagttttcggtcttgaacaagcagttggcaatcccaacactttgctcttccacaaatgaatacttggtgaatggaatgagtttgtctgaaaaaa-ctgc |
38279112 |
T |
|
| Q |
118 |
acaggtaactttgaatatttagtaagaatt-attgtatactttaacaacattgtcacattcatcagaagagttgatgcgagaagaagccgtcttcaactt |
216 |
Q |
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| T |
38279111 |
acaggtaactttgaatatttagtaagaatttattgtatactttaacaacattgtcacattcatcagaagagttgatgcgagaagaagccgtcttcgactt |
38279012 |
T |
|
| Q |
217 |
aaccctagaatcagttaaatttgggatatgaaatatccaattctaaatgcttgttggcaatttctttagttgggtcatataacttctttttagcctcttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38279011 |
aaccctagaatcagttaaatttgggatatgaaatatccaattctaaatgcttgttggcaatttctttagttgggtcatataacttctttttagcctcttt |
38278912 |
T |
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| Q |
317 |
agtcattagtcttgccgcttttggttt |
343 |
Q |
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| T |
38278911 |
agtcattagtcttgccgcttttggttt |
38278885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 135 - 343
Target Start/End: Complemental strand, 38274963 - 38274755
Alignment:
| Q |
135 |
tttagtaagaatt-attgtatactttaacaacattgtcacattcatcagaagagttgatgcgagaagaagccgtcttcaacttaaccctagaatcagtta |
233 |
Q |
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| T |
38274963 |
tttagtaagaatttattgtataccttaacaacatcatcacattcataagaagaattgatgcgagaagaagcc-tcttcgacttaatcctagaatcagtta |
38274865 |
T |
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| Q |
234 |
aatttgggatatgaaatatccaattctaaatgcttgttggcaatttctttagttgggtcatataacttctttttagcctctttagtcattagtcttgccg |
333 |
Q |
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|||||| || ||||||| ||||||||||||||||||| |||||||| |||||| | ||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
38274864 |
aatttgacatgtgaaatagccaattctaaatgcttgtttgcaatttcattagttagctcatataacttctttatagcatctttagtcattagtcgtgccg |
38274765 |
T |
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| Q |
334 |
cttttggttt |
343 |
Q |
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| T |
38274764 |
cttttcgttt |
38274755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 136 - 343
Target Start/End: Complemental strand, 38271210 - 38270998
Alignment:
| Q |
136 |
ttagtaagaatt-attgtatactttaacaacattgtcacattcatcagaag----agttgatgcgagaagaagccgtcttcaacttaaccctagaatcag |
230 |
Q |
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| T |
38271210 |
ttagtaagaatttattgtataccttaaaaacatcatcacattcatctgaatgtgaaattggtgcgagaagaaaccgtcttcgatttaactttagaatcag |
38271111 |
T |
|
| Q |
231 |
ttaaatttgggatatgaaatatccaattctaaatgcttgttggcaatttctttagttgggtcatataacttctttttagcctctttagtcattagtcttg |
330 |
Q |
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||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || |
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| T |
38271110 |
ttaaatttgagatgtgaaatagccaattctaaatgcttgttggcaatttctttagttgggtcatgtaacttcttcttagcctctttagtcattagttgtg |
38271011 |
T |
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| Q |
331 |
ccgcttttggttt |
343 |
Q |
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||||||||||||| |
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| T |
38271010 |
ccgcttttggttt |
38270998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 38271320 - 38271275
Alignment:
| Q |
59 |
tttgctcttccacaaatgaatacttggtgaatggaatgagtttgtc |
104 |
Q |
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| T |
38271320 |
tttgctcttccaccaatgaataattggtgaatggaatgagtttgtc |
38271275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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