View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11054_high_10 (Length: 309)

Name: NF11054_high_10
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11054_high_10
NF11054_high_10
[»] chr2 (1 HSPs)
chr2 (1-293)||(42086942-42087234)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 42086942 - 42087234
Alignment:
Q  1 cgatggcggcggagcagttttttaattgtaagctgttggaagaagagatgggtgtttgtgttgaggttgctagaggaaagagttgtgaagtgaagtatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42086942 cgatggcggcggagcagttttttaattgtaagctgttggaagaagagatgggtgtttgtgttgaggttgctagaggaaagagttgtgaagtgaagtatga 42087041  T
Q  101 agatattgttgagaaaattgagttggttatgggtgagagtagtgagagtggggtgaagattagagagaatgcttgtaagattaaggatatgataaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42087042 agatattgttgagaaaattgagttggttatgggtgagagtagtgagagtggggtgaagattagagagaatgcttgtaagattaaggatatgataaggaat 42087141  T
Q  201 gctgtgaaagatggagaagaagatggagttaaagggtcatctgttaggggtattgatgagttcttatcagctgctgggaagagcaataaaact 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42087142 gctgtgaaagatggagaagaagatggagttaaagggtcatctgttaggggtattgatgagttcttatcagctgctgggaagagcaataaaact 42087234  T

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