View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11054_high_14 (Length: 260)
Name: NF11054_high_14
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_high_14 |
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| [»] scaffold0400 (2 HSPs) |
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| [»] scaffold0365 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 15040273 - 15040044
Alignment:
| Q |
20 |
ggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15040273 |
ggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagacttgaacaattcttcaaactctttggaattg |
15040174 |
T |
|
| Q |
120 |
gacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattatcacctaactg |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15040173 |
gacctgtgaactgagtatttctagccgagaacacagttaactttccactactacatatattgggaggtaaatgacctatgaaattattatcaccaaactg |
15040074 |
T |
|
| Q |
220 |
cagaatcttcaatttgttaagcctattcat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
15040073 |
cagaatcttcaatttgttaagcctattcat |
15040044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 15001620 - 15001433
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacc |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| || |||||||||| | || ||||| |||||||||||||||| ||||| | | || |
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|
| T |
15001620 |
acacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggcttgagcaattcttcaaactctctggaactaggcc |
15001521 |
T |
|
| Q |
124 |
tgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattatca |
211 |
Q |
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||||||||| ||| | | | | ||||| ||||||| |||| ||||| |||||||||||||||||||| | |||||||||||| |
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|
| T |
15001520 |
tgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggtaaatgaccaacaaaattattatca |
15001433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 14467242 - 14467130
Alignment:
| Q |
98 |
ttcttcaaactctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgaccta |
197 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| || || |||||| |||||||||||||| | |||||| |||||||||||||||||| |
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| T |
14467242 |
ttcttcaaactctttggaattgggcctgtgaattggttattgctggcggagaaccaagttaactttccaccagcacatatgttgtgaggtaaatgacctg |
14467143 |
T |
|
| Q |
198 |
tgaaattattatc |
210 |
Q |
| |
|
||||||||||||| |
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|
| T |
14467142 |
tgaaattattatc |
14467130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 15016628 - 15016520
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacc |
123 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||||||||||| |||| |||||| || ||||| |||||||||||||||| ||||| | | || |
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|
| T |
15016628 |
acacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcc |
15016529 |
T |
|
| Q |
124 |
tgtgaactg |
132 |
Q |
| |
|
||||||||| |
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|
| T |
15016528 |
tgtgaactg |
15016520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 15010513 - 15010405
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacc |
123 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||||||||| |||| |||| |||| | || ||||| |||||||||||||||| ||||| | | || |
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|
| T |
15010513 |
acacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggcttgagcaattcttcaaactctctggaactaggcc |
15010414 |
T |
|
| Q |
124 |
tgtgaactg |
132 |
Q |
| |
|
||||||||| |
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|
| T |
15010413 |
tgtgaactg |
15010405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 14533418 - 14533528
Alignment:
| Q |
98 |
ttcttcaaactctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgaccta |
197 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| || || |||||| ||||||||||| || | ||| || ||| |||||||||||||| |
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| T |
14533418 |
ttcttcaaactctttggaattgggcctgtgaattggttattgctggcggagaacttagttaactttctaccagcacaaatgttgagaggtaaatgacctg |
14533517 |
T |
|
| Q |
198 |
tgaaattatta |
208 |
Q |
| |
|
||||||||||| |
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|
| T |
14533518 |
tgaaattatta |
14533528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 14503493 - 14503270
Alignment:
| Q |
26 |
acaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctg |
125 |
Q |
| |
|
|||||||| | ||||||||||||||||| | ||| |||| || || || ||||| | || || || |||||||| ||||||||||||||||| |||| |
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|
| T |
14503493 |
acaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattctttaaactctttggaattggccctg |
14503394 |
T |
|
| Q |
126 |
tgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattatcacctaactgcagaat |
225 |
Q |
| |
|
|||| || ||||| ||||| | ||| || ||| |||||| | ||| || |||||||||||||| |||||||||||||||||| ||| |||| ||| |
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|
| T |
14503393 |
tgaattggttattactagcagtgaaatttgtcaacattccaccaacacaaatgttgtgaggtaaatggcctatgaaattattatcagataattgcaaaat |
14503294 |
T |
|
| Q |
226 |
cttcaatttgttaagcctattcat |
249 |
Q |
| |
|
||||| ||| | | ||||||||| |
|
|
| T |
14503293 |
tttcaaattggttatcctattcat |
14503270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 15024630 - 15024538
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaa |
116 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||||||| |||| |||||||| || || ||| | |||||||||||||||| ||||| |
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|
| T |
15024630 |
acacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaa |
15024538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 15031971 - 15031879
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaa |
116 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||||||| |||| |||||||| || || ||| | |||||||||||||||| ||||| |
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|
| T |
15031971 |
acacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaa |
15031879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 15036533 - 15036441
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaa |
116 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||| | || |||| ||||| || ||||| |||||||||||||||| ||||| |
|
|
| T |
15036533 |
acacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaaggcttgagcaattcttcaaactctctggaa |
15036441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 6004 - 5819
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacc |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||| || ||||| ||||| || ||||||||||||| | |||| |
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|
| T |
6004 |
acacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagacc |
5905 |
T |
|
| Q |
124 |
tgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattat |
209 |
Q |
| |
|
||||||| ||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5904 |
aatgaactggttattactagtggagaaacgagttaactttccactaacacatatattgtgaggtaaatgacctgtgaaattattat |
5819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 12159 - 12099
Alignment:
| Q |
157 |
taactttccactattacatatattgtgaggtaaatgacctatgaaattattatcacctaac |
217 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
12159 |
taactttccactaacacaaatgttgtgcggtaattgacctgtgaaattattatcacctaac |
12099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 6648 - 6463
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacc |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||| || ||||| ||||| || ||||||||||||| | |||| |
|
|
| T |
6648 |
acacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagacc |
6549 |
T |
|
| Q |
124 |
tgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattat |
209 |
Q |
| |
|
||||||| ||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6548 |
aatgaactggttattactagtggagaaacgagttaactttccactaacacatatattgtgaggtaaatgacctgtgaaattattat |
6463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 12802 - 12742
Alignment:
| Q |
157 |
taactttccactattacatatattgtgaggtaaatgacctatgaaattattatcacctaac |
217 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
12802 |
taactttccactaacacaaatgttgtgcggtaattgacctgtgaaattattatcacctaac |
12742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 17848044 - 17847997
Alignment:
| Q |
24 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaa |
71 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17848044 |
acacaccaaagaaatctgttatatttccagaaagttggttttgttcaa |
17847997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 14605397 - 14605297
Alignment:
| Q |
38 |
tctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactgattat |
137 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | || | | || || |||||||||||||||||||||| || |||||||| || |||| |
|
|
| T |
14605397 |
tctgttatatttccagtaagttggttttgttcaagtctaatcctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggttat |
14605298 |
T |
|
| Q |
138 |
t |
138 |
Q |
| |
|
| |
|
|
| T |
14605297 |
t |
14605297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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