View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_high_15 (Length: 253)
Name: NF11054_high_15
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 5302656 - 5302426
Alignment:
| Q |
16 |
atcaaaccagtgagatatcatgatcatggtttaatcggttcaatcactaattcgataatttgtttacaggttgctaggcatggttttgatcattgtagga |
115 |
Q |
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| T |
5302656 |
atcaaaccagtgagatatcatgatcatggtttaatcggttcaatcactaattcgataatttgtttacaggttgctaggcatggttttgatcattgtagga |
5302557 |
T |
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| Q |
116 |
ctgtactactttttatggggtaaaaggaatgagatgctatgttcaccacaaacaaatgtagcagctgcagaattatcaacaatcatggttgatgatccta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5302556 |
ttgtactactttttatggggtaaaaggaatgagatgccatgttcaccacaaacaaatgtagcagctgcagaattatcaacaatcatggttgatgatccta |
5302457 |
T |
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| Q |
216 |
ctttggctcaatcaagagctgttgtagtacc |
246 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5302456 |
ctttggctcaatcaagagctgttgtagtacc |
5302426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 29222602 - 29222438
Alignment:
| Q |
82 |
caggttgctaggcatggttttgatcattgtaggactgtactactttttatggggtaaaaggaatgagatgctatgttcaccacaaacaaatgtagcagct |
181 |
Q |
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| T |
29222602 |
caggttgttaggcatggttttgattataataggattgtactattttttgtggggtaaaaggaatgaaatgccacgtttgcctcaaacaagtgttgcagca |
29222503 |
T |
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| Q |
182 |
gcagaattatcaacaatcatggttgatgatcctactttggctcaatcaagagctgttgtagtacc |
246 |
Q |
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| T |
29222502 |
gcagaattatcaacaagcatggatgatcagcctattgtgtctcaatcaaaagctgtcgtagtacc |
29222438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 29148270 - 29148381
Alignment:
| Q |
86 |
ttgctaggcatggttttgatcattgtaggactgtactactttttatggggtaaaaggaatgagatgctatgttcaccacaaacaaatgtagcagctgcag |
185 |
Q |
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||||||||||||||||||||||| | ||| ||||||||||| ||||||| |||||||||||| | | | ||| || |||||||||||||| ||||||| |
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| T |
29148270 |
ttgctaggcatggttttgatcataatgggattgtactactttctatgggggaaaaggaatgaggtaccacgtttgcctcaaacaaatgtagctgctgcag |
29148369 |
T |
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| Q |
186 |
aattatcaacaa |
197 |
Q |
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|||||||||||| |
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| T |
29148370 |
aattatcaacaa |
29148381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 38850156 - 38850086
Alignment:
| Q |
82 |
caggttgctaggcatggttttgatcattgtaggactgtactactttttatggggtaaaaggaatgagatgc |
152 |
Q |
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||||||| | ||||| ||||||||||| || ||||||| | |||| |||||||||||||||||||||||| |
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| T |
38850156 |
caggttgttgggcatagttttgatcatagtgggactgtgcagctttctatggggtaaaaggaatgagatgc |
38850086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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