View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_high_2 (Length: 594)
Name: NF11054_high_2
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 25035280 - 25035880
Alignment:
| Q |
1 |
ccatatcactaatttcttagtacaaaacatagacatggacatcagactcgacaccaatactaaaacatatctataataatataag----------tgact |
90 |
Q |
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| T |
25035280 |
ccatatcgctaatttcttagtacaaaacatagacgtggacatcagactcgacacagataccgaaacatatctataataatataagaaattataagtgact |
25035379 |
T |
|
| Q |
91 |
caatgtaaccaattgtgctaatgtcggtcactgacacgtgccggataccaaacactccttcaatccgaggtgtcggtgctatgatcatatacaagtctgg |
190 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25035380 |
caatgtaaccaattgtgttaatgtcgatcactgacacgtgccggataccaaacactccttcaatccgaggtgtcggtgctatgatcgtatacaagtctgg |
25035479 |
T |
|
| Q |
191 |
atatatgttctattcattaatctacctaattccattatgcgaggtacata-----------agaaggtgatcaata---attcaatacaaaaactataaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
25035480 |
atatatgttctattcattaatctacctaattccattatgcgaggtacataccctcaattcaaaaaggtgatcaataataattcaatacaaaaactataaa |
25035579 |
T |
|
| Q |
277 |
caaaacctgcagattatatcatatgtataaacttatcttactaaaacaaaaaattggatatgtttcgtttgatcattgatcaatcacttgttagctgaaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25035580 |
caaaacctgcagattatatcatatgtataaacttatcttactaaaacaaaaaattggatatgtttcatttgatcattgatcaatcacttgttagctgaaa |
25035679 |
T |
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| Q |
377 |
ttgatgtctagtttggtgaatctgttgaagctgtaaacttttcaaccttacctcaccagaccttcttttccaaagactatccacctgattttcatcctct |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25035680 |
ttgatgtctagtttggtgaatctgttgaagctgtaaacttttcaaccttacctcaccagaccttcttttccaaagactatccacctgattttcatcctct |
25035779 |
T |
|
| Q |
477 |
aaattcatcactctcttgatcacaggaagaggaggatccatattttcaatacttatagggacaatattctcatttctatgacctttttggtggcagtact |
576 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25035780 |
aacttcatcactctcttgatcacaggaagaggaggatccatattttcaatacttatagggacaatattctcatttctatgacctttttggttgcagtact |
25035879 |
T |
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| Q |
577 |
t |
577 |
Q |
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| T |
25035880 |
t |
25035880 |
T |
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