View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_high_6 (Length: 387)
Name: NF11054_high_6
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 16842413 - 16842770
Alignment:
| Q |
12 |
agagataacggtttaagcagagttcgtctaatttgtttacgatgattaagttgcaagcgagtgaggatgatttggatggtttggttggtttacttgatga |
111 |
Q |
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| T |
16842413 |
agagataacggtttaagcagagttcgtctaatttgtttacgatgattaagttgcaagcgagtgaggatgatttggatggtttggttggtttacttgatga |
16842512 |
T |
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| Q |
112 |
tatggtgagatgtggatgtcattattcttcgataattggtactcttgtgagtgtttgagagggctgggaaagtttatgagttgccgtgttttcttaaagg |
211 |
Q |
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| T |
16842513 |
tatggtgagatgtggatgtcattattcttcgataattggtactcttgtgagtgtttgagagggctgggaaagtttatgagttgccgtgttttcttaaagg |
16842612 |
T |
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| Q |
212 |
tttgttttatctgtatattttggttaatcggagttgttgttccactgtggttatggcttatgtgaagaataagttggtagatgatttgttcttgtaaaga |
311 |
Q |
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| T |
16842613 |
tttgttttatctgtatattttggttaatcggagttgttgttccactgtggttatggcttatgtgaagaataagttggtagatgatttgttcttgtaaaga |
16842712 |
T |
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| Q |
312 |
ggcaggtttgctcgaggatgctgttggaatatataaccagatgatgaaaagtgatgct |
369 |
Q |
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| T |
16842713 |
ggcaggtttgctcgaggatgctgttggaatatataaccagatgatgaaaagtgatgct |
16842770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 24209252 - 24209538
Alignment:
| Q |
12 |
agagataacggtttaagcagagttcgtctaatttgtttacgatgattaagttgcaagcgagtgaggatgatttggatggtttggttggtttacttgatga |
111 |
Q |
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|||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |
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| T |
24209252 |
agagattagggtttaagcctagttcgtctaatttgtttacaatgattaagttgcaagcgaatgaggatgatttggatggtgtggttggtacacttgatga |
24209351 |
T |
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| Q |
112 |
tatggtgagatgtggatgtcattattcttcgataattggtactcttgtgagtgtt--tgagagggctgggaaagtttatgagttgccgtgttttcttaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
24209352 |
tatggtgagatgtggatgtcattattcttcgataattggtactcttgtgagtgtttatgagagggctgggaaagtttatgagttgccgcgtttgcttaaa |
24209451 |
T |
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| Q |
210 |
ggtttgttttatctgtatattttggttaatcggagttgttgttccactgtggttatggcttatgtgaagaataagttggtagatgat |
296 |
Q |
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| T |
24209452 |
ggttcgttttatcggtatattttggttaatcagagctgttgttccactgtggttatggcttatgtgaagaataagttggtggatgat |
24209538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 24209606 - 24209682
Alignment:
| Q |
293 |
tgatttgttcttgtaaagaggcaggtttgctcgaggatgctgttggaatatataaccagatgatgaaaagtgatgct |
369 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24209606 |
tgatttgttcttgtaaagaggcaggtttgcttgaggatgctgttggaatatataaccagatgatgaaaagtaatgct |
24209682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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