View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11054_high_7 (Length: 381)

Name: NF11054_high_7
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11054_high_7
NF11054_high_7
[»] chr3 (7 HSPs)
chr3 (127-370)||(54680614-54680857)
chr3 (169-370)||(54714682-54714881)
chr3 (17-131)||(54680398-54680517)
chr3 (17-76)||(54714117-54714176)
chr3 (17-76)||(54721037-54721096)
chr3 (221-305)||(54721659-54721741)
chr3 (99-131)||(44435170-44435202)
[»] chr6 (2 HSPs)
chr6 (221-305)||(5297812-5297894)
chr6 (99-131)||(11989142-11989174)
[»] chr7 (4 HSPs)
chr7 (98-131)||(24211546-24211579)
chr7 (98-131)||(33471485-33471518)
chr7 (98-131)||(37066177-37066210)
chr7 (127-155)||(42043888-42043916)
[»] chr4 (4 HSPs)
chr4 (94-131)||(17659577-17659614)
chr4 (98-131)||(13743970-13744003)
chr4 (98-131)||(30051455-30051488)
chr4 (98-131)||(51126217-51126250)
[»] chr1 (5 HSPs)
chr1 (98-131)||(45238986-45239019)
chr1 (98-131)||(26660639-26660672)
chr1 (98-131)||(27552342-27552375)
chr1 (99-131)||(33324157-33324189)
chr1 (99-131)||(39181045-39181077)
[»] chr2 (7 HSPs)
chr2 (99-131)||(8382910-8382942)
chr2 (98-127)||(3373081-3373110)
chr2 (98-131)||(30905236-30905269)
chr2 (97-130)||(35607409-35607442)
chr2 (91-123)||(6048082-6048114)
chr2 (99-131)||(39801012-39801044)
chr2 (103-131)||(41145375-41145403)
[»] chr8 (2 HSPs)
chr8 (96-131)||(32480181-32480216)
chr8 (98-131)||(17911358-17911391)
[»] chr5 (4 HSPs)
chr5 (97-131)||(31787330-31787364)
chr5 (102-131)||(21152587-21152616)
chr5 (102-131)||(21159722-21159751)
chr5 (102-131)||(21163529-21163558)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 127 - 370
Target Start/End: Original strand, 54680614 - 54680857
Alignment:
Q  127 attttgaaacggagggagtatatatatttatacacacgtatgaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttaccggat 226  Q
    ||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54680614 attttgaaacggatggagtatatatatatacacacacgtatcaaatcaaataaatgtatttatgtgagatgatattgatatctgtatccatttaccggat 54680713  T
Q  227 tctcgagtgatttgttggtttgatgcatgcatatgtcaatcattccatactcgatttgagaccatgcaatgtgaaggatcacaactatgattgtgaactg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54680714 tctcgagtgatttgttggtttgatgcatgcatatgtcaatcattccatactcgatttgagaccatgcaatgtgaaggatcacaactatgattgtgaactg 54680813  T
Q  327 aaagtatatatattgattgaaataaattcacatgcttgtttctt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54680814 aaagtatatatattgattgaaataaattcacatgcttgtttctt 54680857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 169 - 370
Target Start/End: Original strand, 54714682 - 54714881
Alignment:
Q  169 aaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttaccggattctcgagtgatttgttggtttgatgcatgcatatgtcaatca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||| ||    
T  54714682 aaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcgtgcat--gtcaacca 54714779  T
Q  269 ttccatactcgatttgagaccatgcaatgtgaaggatcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcacatgcttgtttc 368  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54714780 ttccatactcgatttgagaccaggcaatgtgaaggatcacagctatgattgtgaactgaaagtatatatattgattgaaataaattcacatgcttgtttc 54714879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 54680398 - 54680517
Alignment:
Q  17 aattcatttattttttcgtttatggaaaaatgtggtgttataaattgaagtgataagaagattgcggccatggtttgtgttatactccctc-----cgtc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  54680398 aattcatttattttttcgtttatggaaaaatgtggtgttataaattgaagtgataagaagattgcggccatggtttgtgttatactccctccgtctcgtc 54680497  T
Q  112 tcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||    
T  54680498 tcaaaatataagtaaatttt 54680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 54714117 - 54714176
Alignment:
Q  17 aattcatttattttttcgtttatggaaaaatgtggtgttataaattgaagtgataagaag 76  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  54714117 aattcacttattttttcgtttaaggaaaaatgttgtgttataaattgaagtgatatgaag 54714176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 54721037 - 54721096
Alignment:
Q  17 aattcatttattttttcgtttatggaaaaatgtggtgttataaattgaagtgataagaag 76  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||    
T  54721037 aattcatttattttttcgtttaaggataaatgtggtgttataaaatgaagtgatatgaag 54721096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 54721659 - 54721741
Alignment:
Q  221 ccggattctcgagtgatttgttggtttgatgcatgcatatgtcaatcatt-ccatactcgatttgagaccatgcaatgtgaaggat 305  Q
    |||||||||||||| |||||| ||||||||||| ||||  ||||| |||| |||||||||||| || |||| ||| ||||||||||    
T  54721659 ccggattctcgagtaatttgt-ggtttgatgcacgcat--gtcaaccatttccatactcgattcgaaaccaggcattgtgaaggat 54721741  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 44435170 - 44435202
Alignment:
Q  99 tactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||| |||||||    
T  44435170 tactccctccgtctcaaaatataagcaaatttt 44435202  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 5297812 - 5297894
Alignment:
Q  221 ccggattctcgagtgatttgttggtttgatgcatgcatatgtcaatcattcc-atactcgatttgagaccatgcaatgtgaaggat 305  Q
    |||||||||||||| |||||| ||||||||||||||||  ||||| |||| | ||||||||||||| |||| ||| ||||||||||    
T  5297812 ccggattctcgagtaatttgt-ggtttgatgcatgcat--gtcaaccatttcgatactcgatttgaaaccaggcattgtgaaggat 5297894  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 11989142 - 11989174
Alignment:
Q  99 tactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||| |||||||    
T  11989142 tactccctccgtctcaaaatataagcaaatttt 11989174  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 24211546 - 24211579
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||||||||||||    
T  24211546 atactccctccgtctcaaaatataagtaaatttt 24211579  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 33471485 - 33471518
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  33471485 atactccctccgtctcaaaatataagcaaatttt 33471518  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 37066177 - 37066210
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  37066177 atactccctccgtctcaaaatataagcaaatttt 37066210  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 42043916 - 42043888
Alignment:
Q  127 attttgaaacggagggagtatatatattt 155  Q
    |||||||||||||||||||||||||||||    
T  42043916 attttgaaacggagggagtatatatattt 42043888  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 17659614 - 17659577
Alignment:
Q  94 tgttatactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17659614 tgttatactccctccgtctcaaaatataagcaaatttt 17659577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 13744003 - 13743970
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  13744003 atactccctccgtctcaaaatataagcaaatttt 13743970  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 30051488 - 30051455
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  30051488 atactccctccgtctcaaaatataagcaaatttt 30051455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 51126250 - 51126217
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  51126250 atactccctccgtctcaaaatataagcaaatttt 51126217  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 45238986 - 45239019
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||||||||||||    
T  45238986 atactccctccgtctcaaaatataagtaaatttt 45239019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 26660639 - 26660672
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  26660639 atactccctccgtctcaaaatataagcaaatttt 26660672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 27552375 - 27552342
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  27552375 atactccctccgtctcaaaatataagcaaatttt 27552342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 33324189 - 33324157
Alignment:
Q  99 tactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||| |||||||    
T  33324189 tactccctccgtctcaaaatataagcaaatttt 33324157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 39181045 - 39181077
Alignment:
Q  99 tactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||| |||||||    
T  39181045 tactccctccgtctcaaaatataagcaaatttt 39181077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 8382942 - 8382910
Alignment:
Q  99 tactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||||||||||    
T  8382942 tactccctccgtctcaaaatataagtaaatttt 8382910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 3373110 - 3373081
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  3373110 atactccctccgtctcaaaatataagtaaa 3373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 30905269 - 30905236
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||| ||||||||||||||||||||    
T  30905269 atactccctccgtttcaaaatataagtaaatttt 30905236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 35607409 - 35607442
Alignment:
Q  97 tatactccctccgtctcaaaatataagtaaattt 130  Q
    |||||||||||||| |||||||||||||||||||    
T  35607409 tatactccctccgtttcaaaatataagtaaattt 35607442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 6048114 - 6048082
Alignment:
Q  91 ttgtgttatactccctccgtctcaaaatataag 123  Q
    |||||||||||||||||||| ||||||||||||    
T  6048114 ttgtgttatactccctccgtttcaaaatataag 6048082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 39801044 - 39801012
Alignment:
Q  99 tactccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||| |||||||    
T  39801044 tactccctccgtctcaaaatataagcaaatttt 39801012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 41145403 - 41145375
Alignment:
Q  103 ccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||||||    
T  41145403 ccctccgtctcaaaatataagtaaatttt 41145375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 32480181 - 32480216
Alignment:
Q  96 ttatactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||||| |||||||    
T  32480181 ttatactccctccgtctcaaaatataagcaaatttt 32480216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 17911358 - 17911391
Alignment:
Q  98 atactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||||||||||||||||||||| |||||||    
T  17911358 atactccctccgtctcaaaatataagcaaatttt 17911391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 31787364 - 31787330
Alignment:
Q  97 tatactccctccgtctcaaaatataagtaaatttt 131  Q
    |||||||| ||||||||||||||||||||||||||    
T  31787364 tatactccatccgtctcaaaatataagtaaatttt 31787330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 21152587 - 21152616
Alignment:
Q  102 tccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||||||||    
T  21152587 tccctccgtctcaaaatataagtaaatttt 21152616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 21159722 - 21159751
Alignment:
Q  102 tccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||||||||    
T  21159722 tccctccgtctcaaaatataagtaaatttt 21159751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 21163529 - 21163558
Alignment:
Q  102 tccctccgtctcaaaatataagtaaatttt 131  Q
    ||||||||||||||||||||||||||||||    
T  21163529 tccctccgtctcaaaatataagtaaatttt 21163558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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