View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_high_9 (Length: 326)
Name: NF11054_high_9
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 53603548 - 53603867
Alignment:
| Q |
1 |
tcttgtcaaatctacaatttgtttgagtttattgtaaa-tattaattatcaaacattgttgatcacagctttttcttatgcctatttttgctcctacttt |
99 |
Q |
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| T |
53603548 |
tcttgtcaaatctacaatttgtttgagtttattgtaaaatattaat-atcaaacattgttgatcacagctttttcttatgcctatttttgctcctacttt |
53603646 |
T |
|
| Q |
100 |
gggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccctttgtaattttataagt--nnnnnnnnntacacatt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
53603647 |
gggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccttttgtaattttataagtaaaaaaaaaaatacacatt |
53603746 |
T |
|
| Q |
198 |
tttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgctaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53603747 |
tttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgctaat |
53603846 |
T |
|
| Q |
298 |
tacaatttacaagttcatctc |
318 |
Q |
| |
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||||||||||||||||||||| |
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| T |
53603847 |
tacaatttacaagttcatctc |
53603867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 39170622 - 39170530
Alignment:
| Q |
203 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgcta |
295 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtctttagctactctattgcta |
39170530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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