View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_low_14 (Length: 300)
Name: NF11054_low_14
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 8284593 - 8284875
Alignment:
| Q |
18 |
catcaaacactcacatcaccacccaactcctcatcatcatcttcttctggtcatcaaaaagcctctcccgatgaaattgtaatttcgaacaatattggat |
117 |
Q |
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| T |
8284593 |
catcaaacactcacatcaccacccaactcatcatcatcatcttcttctggtcatcaaaaagcttctcccgatgaaattgtaatttcgaacaatatcggat |
8284692 |
T |
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| Q |
118 |
actctaatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaac |
217 |
Q |
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| T |
8284693 |
tctccaatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaacccctactggaac |
8284792 |
T |
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| Q |
218 |
cgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacac |
300 |
Q |
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| T |
8284793 |
cgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacac |
8284875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 275
Target Start/End: Original strand, 34694753 - 34694900
Alignment:
| Q |
128 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
227 |
Q |
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| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
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| Q |
228 |
ctacctacacccccatttttctctttccctgtggagaatcatattaat |
275 |
Q |
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| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaat |
34694900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
211 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
299 |
Q |
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| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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