View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_low_15 (Length: 263)
Name: NF11054_low_15
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 30458802 - 30458977
Alignment:
| Q |
75 |
cattcatcagctacaactgaccatatattatcctcagcttcataagcagcaactc--atatcaaagttataatta-ttaaattttaaacatctttgagtc |
171 |
Q |
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| T |
30458802 |
cattcatcagctacaactgacaccatactatcctcagcttcataagcagcaactctgacaccaaagttagaattacttaaattttaaacatctttgagcc |
30458901 |
T |
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| Q |
172 |
gttcaattgcaacattgtaatctcccatttcgtacgataatgttgcagtgggaaacaaaacaatttatttggaatt |
247 |
Q |
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| T |
30458902 |
gttcaattgcaacattgtaatctctcatttcgtacgataatgttgcaataggaaacaaagcaattcatttggaatt |
30458977 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 30457382 - 30457447
Alignment:
| Q |
13 |
gaacacttaagatcttagaatcataacttatttcttttatttctttctttaacatggtcatgcatt |
78 |
Q |
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| T |
30457382 |
gaacatttaaggtcttagaatcataacttatttcttttatttctttcttcaacatggtcatacatt |
30457447 |
T |
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