View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11054_low_19 (Length: 245)
Name: NF11054_low_19
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_low_19 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 1281463 - 1281678
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281463 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
1281562 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1281563 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctctggagtcataactgtaatgcttccgaaattcac |
1281662 |
T |
|
| Q |
218 |
ataaacaacagatctc |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1281663 |
ataaacaacagatctc |
1281678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 4617371 - 4617593
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4617371 |
actttgtcttgtggacaccaacttgctattaggcctctatctgcaatttcatttgtaaactcagatgagaaaatcactgagccaccaatgacaagatcag |
4617470 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||| |||| |||||||||||||||| | | |||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
4617471 |
gccttatgatccacaaaaatgatttcttgcaattggccaaaccccaagcaaattccagtaattgctcgggtgtcataactgtaatgctgccgaaattcac |
4617570 |
T |
|
| Q |
218 |
ataaacaacagatctctgctcct |
240 |
Q |
| |
|
||||||||| |||| | |||||| |
|
|
| T |
4617571 |
ataaacaactgatcccggctcct |
4617593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 4602138 - 4602360
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4602138 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcatttgtaaactcagatgacaaaatcactgagccaccaatgacaagatcag |
4602237 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||||||||| | || ||| |||| ||||||||| ||||| | ||| | || ||||||||||||||||| || |||||||| |
|
|
| T |
4602238 |
gcctaatgatccacaaaaatggtttatggcaattggccaaaccccaagcgaattctaataattgatggggtgtcataactgtaatgctgccaaaattcac |
4602337 |
T |
|
| Q |
218 |
ataaacaacagatctctgctcct |
240 |
Q |
| |
|
||||||||| |||| | |||||| |
|
|
| T |
4602338 |
ataaacaacggatcccggctcct |
4602360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 4564060 - 4564282
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
4564060 |
actttctcctgtggacaccaacttgcaattaagcctctatctgaaatttcattcacaaactcagatgacaaaacgactgagccaccaatgacaaggtcag |
4564159 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||||| |||| ||| |||| ||||||||||||||| ||||| | || |||||||||||||||||||| |||||||| |
|
|
| T |
4564160 |
gcctaatgatccacaaaaagggtttattgcaattggccaacccccaagcaaattccaacagttgttttggtgtcataactgtaatgcttccaaaattcac |
4564259 |
T |
|
| Q |
218 |
ataaacaacagatctctgctcct |
240 |
Q |
| |
|
||||||||| |||| | |||||| |
|
|
| T |
4564260 |
ataaacaacggatcccggctcct |
4564282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 4461472 - 4461685
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4461472 |
acttgctcttgcggacaccagcttgctattaggcctctatctgaaatttcattcacaaactcagatgacaaaataaacgagccgccaatgacaagatcag |
4461571 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||| ||||| |||||||||||| || ||||| || |||||||||||||| ||||| || ||||| || |
|
|
| T |
4461572 |
gcctaatgatccataaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgtgatgctgccaaaatttac |
4461671 |
T |
|
| Q |
218 |
ataaacaacagatc |
231 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
4461672 |
atagacaacagatc |
4461685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 4506206 - 4506417
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||| |||||||||||||||||| ||||| || || ||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
4506206 |
actttctcttgtgaacaccagcttgctataaggcttctatctgaaatttcatttgcaaactctgaagacaaaaccactgagccaccaattacaagatcag |
4506305 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||| |||||||||||| || || || |||||||| ||||| ||| |||||||| |||||||| |
|
|
| T |
4506306 |
gcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaactctaaaaatttctccggagacataattgtgatgcttccaaaattcac |
4506405 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4506406 |
ataaacaacaga |
4506417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 4514905 - 4514691
Alignment:
| Q |
17 |
aactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
4514905 |
aactttctcttgtggacaccaacttgctattaggcctctatctgcaatttcattcacaaactcagacgacaaaaccactgagccaccaatgacaagatca |
4514806 |
T |
|
| Q |
117 |
ggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattca |
216 |
Q |
| |
|
|||||| ||||||| ||||| | |||||||||||| |||| |||||||||||| || | || |||||||| ||||| || ||||| || ||||| | |
|
|
| T |
4514805 |
ggcctaatgatccataaaaaggttttcttgctattggccaaaccccaagcaaactctaacaatttctccggagacataatcgtgatgctaccaaaattaa |
4514706 |
T |
|
| Q |
217 |
cataaacaacagatc |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4514705 |
cataaacaacagatc |
4514691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 4622491 - 4622698
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||| |||||||||||||| |||| |||||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
4622491 |
acttcctcttgtggacaccaacctgcgattaggcctctacctgaaatttcattctcaaactcagatgacaaaataaacgagccgcccatgacaaggtcag |
4622590 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||| || ||||||| ||||||||||| || |||||||| |
|
|
| T |
4622591 |
gcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaatagttgatctcgagtcatcactgtaatgctgccaaaattcac |
4622690 |
T |
|
| Q |
218 |
ataaacaa |
225 |
Q |
| |
|
||||||| |
|
|
| T |
4622691 |
gtaaacaa |
4622698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 4626300 - 4626511
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||| || |||||| |||| | |||||| ||||| |||||||||| |
|
|
| T |
4626300 |
actttctcttgcggacaccagcttgcgattaggcctctatctgaaatttcattctcaaactcggatgacgaaataaatgagccaccaatcacaagatcag |
4626399 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| || |||| || |||||||||||| ||| ||| || || ||||| |
|
|
| T |
4626400 |
gcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagtttctgtggagtcataactataacgctgccaaagttcac |
4626499 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4626500 |
ataaacaacaga |
4626511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4613501 - 4613293
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| || || ||||||||||||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4613501 |
acttgctcttgaggacaccagctcgcgattaggcctctatctgaaatttcattcacaaactctgatgacaaaacaactgagccgccaatgacaagatcag |
4613402 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||| |||| |||||||||||| || |||| || | ||||||||| || ||||| || |||||||| |
|
|
| T |
4613401 |
gcctaatgatccacaaaaagggttgcttgctattcgccaaaccccaagcaaactctaatagtttttctgcagtcataacggtcatgctcccaaaattcac |
4613302 |
T |
|
| Q |
218 |
ataaacaac |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
4613301 |
ataaacaac |
4613293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 4574657 - 4574871
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| |||| ||| ||||| |||||||||||||||| |
|
|
| T |
4574657 |
actttctcttgtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcag |
4574756 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||| || |||| |||||||||||| || || | ||| ||| |||||| || ||||| || ||||| || |
|
|
| T |
4574757 |
gcctaatgatccacaaaaagggttttttgctgttggccaaaccccaagcaaactctacgagcttctctcgagacataacagtgatgctgccaaaatttac |
4574856 |
T |
|
| Q |
218 |
ataaacaacagatct |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4574857 |
ataaacaacagatct |
4574871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 3172090 - 3172302
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| || ||||| |||||||||||||||| |
|
|
| T |
3172090 |
actttctcttgcggacaccaacttgctattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcag |
3172189 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| || || | |||||||||||| || | || ||| ||| ||||||| | ||||| || ||||| || |
|
|
| T |
3172190 |
gcctaataatccacaaaaagggtttcttgctgttggctaaaccccaagcaaactctaataatttctcttgagacataactatgatgctgccaaaatttac |
3172289 |
T |
|
| Q |
218 |
ataaacaacagat |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3172290 |
ataaacaacagat |
3172302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 4299598 - 4299382
Alignment:
| Q |
24 |
tcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctag |
123 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||| ||||||||||||| |||| |||||||||||||| | |||||||||||||||| || |||||| |
|
|
| T |
4299598 |
tcttgtggacactagcttgcggttaggcctctatttgaaatttcattctcaaactcagatgacaaaataaacaagccgccaatgacaaggtctggcctaa |
4299499 |
T |
|
| Q |
124 |
tgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacataaac |
223 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| ||||||||||| || |||||||| |||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
4299498 |
tgatccacaaaaatggtttcctgcaattggccaaaccccaagcaatctctaacagttgctctggagtcataactgtaacgctgccaaaattcacataaac |
4299399 |
T |
|
| Q |
224 |
aacagatctctgctcct |
240 |
Q |
| |
|
||| |||| | |||||| |
|
|
| T |
4299398 |
aaccgatcccggctcct |
4299382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 4560855 - 4561005
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| |||| ||| ||||| |||||||||||||||| |
|
|
| T |
4560855 |
actttctcttgtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaa-tcagatgagaaaaccaccgagccaccaatgacaagatcag |
4560953 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
169 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
4560954 |
gcctaatgatccataaaaatggtttcttgctgttggccaaaccccaagcaaa |
4561005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 4516670 - 4516881
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||| ||| |||||||| |||| || ||||||||||| || ||||| ||||||||||| |||| |
|
|
| T |
4516670 |
actttctcttgcggacaccagcttgctattacgcctctatccgaagtttcattcacaaaatcggatgacaaaataaccgagccaccaatgacaaggtcag |
4516769 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| || |||| ||||||||| || || ||||| || |||||||| || || |||||||| |||||||| |
|
|
| T |
4516770 |
gcctaataatccacaaaaaaggtttcttgctgttggccaaaccccaagcgaactctaacagttgatctggagtcatgaccgtgatgcttccaaaattcac |
4516869 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
4516870 |
ataaactacaga |
4516881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 4266949 - 4266735
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
4266949 |
actttatcttgtggacaccaacttgctattagtcctctatctgaaatttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcag |
4266850 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| | ||||||||||| || |||||||| || |||| |||||||||||| || || | ||| | | ||||||||| ||||| || ||||| || |
|
|
| T |
4266849 |
gcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttac |
4266750 |
T |
|
| Q |
218 |
ataaacaacagatct |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4266749 |
ataaacaacagatct |
4266735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 4457943 - 4458155
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||| |||| || |||||||||| || ||||| |||||||||||||||| |
|
|
| T |
4457943 |
actttatcttgtggacaccaacttgctattaagcctctatcagaagtttcattcacaaaatccgatgacaaaacaaccgagccaccaatgacaagatcag |
4458042 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatgg-tttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattca |
216 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| || |||| | ||||||||||||| || | ||| ||| ||||||||| |||||||| ||||| | |
|
|
| T |
4458043 |
gcctagttatccacaaaaaaggttttcttgctgttggccaaaacccaagcaaattctaagagcttctcttgagacataactgtgatgcttccaaaattta |
4458142 |
T |
|
| Q |
217 |
cataaacaacaga |
229 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
4458143 |
cataaataacaga |
4458155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 4259937 - 4259726
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| || || |||||||||||||| ||||||||| || |||| |||||||||||||| | ||||| ||||| | || |||| |
|
|
| T |
4259937 |
acttgctcttgcggacaccagctcgcgattaggcctctatccgaaatttcactctcaaactcagatgacaaaataaaggagccaccaataatgaggtcag |
4259838 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||| ||||||||||| || || ||| || |||||||||||||||||||| || |||||||| |
|
|
| T |
4259837 |
gcctaatgatccacaaaaagggtttcttgctattggccaatccccaagcaaactctaaaaattgatctggagtcataactgtaatgctgccaaaattcac |
4259738 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
4259737 |
gtaaacaacaga |
4259726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 4490135 - 4489925
Alignment:
| Q |
21 |
ttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| | | |||||| ||||| ||||||||||||| |
|
|
| T |
4490135 |
ttctcttgtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgacaacacctgtgagccaccaataacaagatcaggcc |
4490036 |
T |
|
| Q |
121 |
tagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacata |
220 |
Q |
| |
|
|| ||||||||||||| ||||||||||| || |||| |||||| ||||| || || | ||| ||| |||||| || ||||| || ||||| ||||| |
|
|
| T |
4490035 |
taatgatccacaaaaagggtttcttgctgttggccaaaccccatgcaaactctaatagcttctctcgagacataacagtgatgctgccaaaatttacata |
4489936 |
T |
|
| Q |
221 |
aacaacagatc |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
4489935 |
aacaacagatc |
4489925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 4579781 - 4579992
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| || | |||||||||||||||||||||||||||| |||| || |||||||||| |||||||||| ||||||||||| | |
|
|
| T |
4579781 |
acttgctcttgcggacaccagctcgttattaggcctctatctgaaatttcattcacaaactccgatgacaaaacagctgagccgccgatgacaagatcgg |
4579880 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||| || | |||||| ||||| || |||| || | |||||||||||| | ||| || |||||||| |
|
|
| T |
4579881 |
gcctaatgatccacaaaaagggttgcttgctatttgctaaaccccatgcaaactctaacagtttttctgcagtcataactgtcaagctcccaaaattcac |
4579980 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4579981 |
ataaacaacaga |
4579992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 4598520 - 4598671
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| ||||||| ||||| | || |||||||||||||||||||||| |||| || |||||||||| || ||||| |||||||||||||||| |
|
|
| T |
4598520 |
acttgctcttgcagacaccagcttgcaactaagcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcag |
4598619 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
169 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
4598620 |
gcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaa |
4598671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 4481041 - 4481255
Alignment:
| Q |
17 |
aactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | | ||||||||||| | ||||||||| ||||||||||||| | |
|
|
| T |
4481041 |
aactttctcttgtggacaccaacttgctattaggcctctatttgaaatttctttcaaatactcagatgacaacaccactgagccaccaatgacaagatta |
4481140 |
T |
|
| Q |
117 |
ggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattca |
216 |
Q |
| |
|
| |||| | ||||||||||| ||| |||||||| || | |||||||||||| || |||| ||| ||| ||||| ||| ||||| || ||||| | |
|
|
| T |
4481141 |
gacctaataatccacaaaaagttttttttgctattggcaaaaccccaagcaaactctaagagtttctcttgagacataattgtgatgctgccaaaattta |
4481240 |
T |
|
| Q |
217 |
cataaacaacagatc |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4481241 |
cataaacaacagatc |
4481255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 4504180 - 4503967
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||| ||| |||||||| |||| ||||||||||| | | ||||||| ||||| |||||||||| |
|
|
| T |
4504180 |
actttatcttgtggacaccaacttgctacaagtcctctattagaagtttcattcacaaaatcagatgacaacacctctgagccaccaataacaagatcag |
4504081 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| | ||||||||||| |||||||||||||| |||| |||||||||||| || | || || || ||||||||||||||| || ||||| || |
|
|
| T |
4504080 |
gcctaataatccacaaaaaaggtttcttgctattggccaaaccccaagcaaactctaacaatttatcttaagacataactgtaatgctgccaaaatttac |
4503981 |
T |
|
| Q |
218 |
ataaacaacagatc |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4503980 |
ataaacaacagatc |
4503967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 4592580 - 4592788
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| || || |||| |||||||||||||||||||||| |||| || |||||||||| | || ||| |||||||||||||||| |
|
|
| T |
4592580 |
acttgctcttgaggacaccagctcgcgattacgcctctatctgaaatttcattcacaaactccgatgacaaaacaattgtgccaccaatgacaagatcag |
4592679 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||||| |||| ||| |||| |||||||||||| || | || ||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
4592680 |
gcctaatgatccacaaaaaaggtttattgcaattggccaaaccccaagcaaactctaacattttctcttcattcataactgtaaggctgccgaaattcac |
4592779 |
T |
|
| Q |
218 |
ataaacaac |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
4592780 |
ataaacaac |
4592788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 4571321 - 4571529
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||| | ||||||| || ||||||||||||||||||||||||||| |||| || |||||||||| |||||||| |||||||||||||| | |
|
|
| T |
4571321 |
actttctcttgcgagcaccaaccagcaattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaactgagccaccaatgacaagatcgg |
4571420 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||| || | |||||| ||||| || |||| || | |||||||||||| |||| || |||||||| |
|
|
| T |
4571421 |
gcctaatgatccacaaaaagagttgcttgctatttgctaaaccccatgcaaactctaacagtttttctgaagtcataactgtcctgctcccaaaattcac |
4571520 |
T |
|
| Q |
218 |
ataaacaac |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
4571521 |
ataaacaac |
4571529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 4470179 - 4470365
Alignment:
| Q |
45 |
attaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttct |
144 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || ||||| |||| || |||||||||||||||||||| |||||| ||||||||||||| |||| || |
|
|
| T |
4470179 |
attaggcctctatctgaaattccatttacaatctctgatgagaaaactaccgagccgccaatgacaagatcgggcctaatgatccacaaaaagggttgct |
4470278 |
T |
|
| Q |
145 |
tgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacataaacaacagatc |
231 |
Q |
| |
|
||||||| |||| |||||||||||| || |||| ||| |||| ||||||||| | ||| |||||||| ||||| |||||||||| |
|
|
| T |
4470279 |
tgctatttgccaaaccccaagcaaactctaacagtttctctggagacataactgtgacgctgccgaaatttacatagacaacagatc |
4470365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 4585985 - 4586193
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| || ||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||| || || || |||||||||||||||| |
|
|
| T |
4585985 |
acttgctcttgcgggcaccaacccgcgattaggcctctatctgaaatttcattcttaaactcagatgacaaaaccaaggaaccaccaatgacaagatcag |
4586084 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
| ||| ||||||| ||||| ||| ||||||||| |||| |||||||||||| || |||| || | |||||||||||| |||| || |||||||| |
|
|
| T |
4586085 |
gtctaatgatccataaaaaatgttgcttgctattggccaaaccccaagcaaactctaatagtttttctgtagtcataactgttgtgctcccaaaattcac |
4586184 |
T |
|
| Q |
218 |
ataaacaac |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
4586185 |
ataaacaac |
4586193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 229
Target Start/End: Complemental strand, 4256347 - 4256196
Alignment:
| Q |
78 |
tcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaa |
177 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| || ||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| || | |
|
|
| T |
4256347 |
tcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatacacaaaaatggtttcttgctattggccaatccccaagcaaactctaaca |
4256248 |
T |
|
| Q |
178 |
gttgctccggagtcataactgtaatgcttccgaaattcacataaacaacaga |
229 |
Q |
| |
|
|||| || |||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
4256247 |
gttgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacaga |
4256196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4568405 - 4568535
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| |||||||||| ||| || ||||| |||| || ||||||||||| |||||||| ||||||||||| | || |
|
|
| T |
4568405 |
acttgctcttgcggacaccagcttgctatttggcctctatccgaagttccattcacaaactcggatgacaaaataactgagccaccaatgacaagctaag |
4568504 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgct |
148 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |
|
|
| T |
4568505 |
gcctaatgatccacaaaaaaggtttcttgct |
4568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 4557501 - 4557682
Alignment:
| Q |
45 |
attaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttct |
144 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||| |||||||| || ||||||||||| |||||| ||||||||||||| |||| || |
|
|
| T |
4557501 |
attaggcctctatctgaaatttcattgacaaactccgatgacaaaacaactgagccaccgatgacaagatcgggcctaatgatccacaaaaagggttgct |
4557600 |
T |
|
| Q |
145 |
tgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacataaacaac |
226 |
Q |
| |
|
||||||| || | |||||| ||||| || |||| || | ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
4557601 |
tgctatttgctaaaccccatgcaaactctaacagtttttctgccgtcataactgtcatgctcccaaaattcacataaacaac |
4557682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 4493306 - 4493346
Alignment:
| Q |
20 |
tttctcttgtggacaccaacttgctattaggcctctatctg |
60 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4493306 |
tttctcttgtggacaccaactagcaattaggcctctatctg |
4493346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 1674575 - 1674788
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1674575 |
actttctcttgtggacaccaatttgatattaggcctctatctgaaatttctttcataaactcagatgacaaaaccactgagccaccaatgacaagatcag |
1674674 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||| || |||| |||||||||||| ||| ||||| || ||||||||||| ||||||| ||||||||||| |
|
|
| T |
1674675 |
gcctagtgatccacaaaaaaggtttcttgcaatcggccaaaccccaagcaaactccaatagttgatctggagtcataacaataatgctaccgaaattcac |
1674774 |
T |
|
| Q |
218 |
ataaacaacagatc |
231 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
1674775 |
ataaacaaccgatc |
1674788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 20863623 - 20863475
Alignment:
| Q |
21 |
ttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcc |
120 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
20863623 |
ttctcttgtggacaccaactcgcgattaggcctctatctgaaatttcattcacaaacgcagatgaaaaaatcaccgagccaccaatgacaagatcaggcc |
20863524 |
T |
|
| Q |
121 |
tagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
169 |
Q |
| |
|
|| ||||||||||||| ||||||||||| || |||| |||||| ||||| |
|
|
| T |
20863523 |
taatgatccacaaaaagggtttcttgctgttggccaaaccccatgcaaa |
20863475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 16686050 - 16685842
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| || ||||| || || ||||||| ||||||||| ||||||||| ||| ||||||||||||| ||| || |||| |||||||||||||| |
|
|
| T |
16686050 |
acttgctcttgcgggcaccagctcgcgattaggcttctatctgagatttcattcttaaactcagatgacaaaaccacggaaccgcaaatgacaagatcag |
16685951 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
|||| ||||||| ||| ||| ||||||||| | || |||||||||||| || |||| || | |||||||||||| ||||| || |||||||| |
|
|
| T |
16685950 |
acctaatgatccattgaaaatgttgcttgctattggtcaaaccccaagcaaactctaatagtttttctgcagtcataactgtcatgctcccaaaattcac |
16685851 |
T |
|
| Q |
218 |
ataaacaac |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
16685850 |
ataaacaac |
16685842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 3502 - 3291
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||| || ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
3502 |
acttgctcttgtggacaccagcttgtgattaggcctctatctgaaatttcattctcaaattctgatgacaaaataaacgagccgccaatgacaagatcag |
3403 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
3402 |
gcctaatgatccacaaaaacggtttcttgctatcggccaaaccccaagcaaattctaacagttgatttggagtcataactgtaatgctgccgaaattcac |
3303 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3302 |
ataaacaacaga |
3291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 3086769 - 3086980
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| |||||| |||||||| ||||| ||||| ||||||||||||||||| ||| |||| |||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
3086769 |
acttgctcttgcggacaccagcttgcgattagacctctatctgaaatttctttctcaaactcagatgacataataaaggagccgccaatgacaagatcag |
3086868 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |||||||||||| || |||||||| ||||||||||||||||||| || ||| |||| |
|
|
| T |
3086869 |
gcctaatgatccacaaaaatggtttcttgctattggccaaaccccaagcaaactctaatagttgctcttgagtcataactgtaatgctgccaaaactcac |
3086968 |
T |
|
| Q |
218 |
ataaacaacaga |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3086969 |
ataaacaacaga |
3086980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4469 - 4261
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
4469 |
acttgctcttgtggacaccagctcgcaattaggcctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcag |
4370 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
217 |
Q |
| |
|
||||| ||||||||||||| | |||||| | ||| | || | |||||||||| || ||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4369 |
gcctaatgatccacaaaaaggatttcttacaattggtcaaaacccaagcaaactctaacagttgatctggagtcataactgtaatgcttccaaaattcac |
4270 |
T |
|
| Q |
218 |
ataaacaac |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
4269 |
ataaacaac |
4261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 27999883 - 27999753
Alignment:
| Q |
17 |
aactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatca |
116 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||||||||| | |
|
|
| T |
27999883 |
aactttctcttgtggacaccaatttgatattaggcctctatctgaaatttctttcctaaactcagatgacaaaaccactgagccaccaatgacaagatta |
27999784 |
T |
|
| Q |
117 |
ggcctagtgatccacaaaaatggtttcttgc |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
27999783 |
ggcctagtgatccacaaaaaaggtttcttgc |
27999753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 24103348 - 24103499
Alignment:
| Q |
18 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| || ||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
24103348 |
actttatcttgtggacaccaacttgctattagtcctctatctgaaacttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcag |
24103447 |
T |
|
| Q |
118 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
169 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||| |||| |||||||||||| |
|
|
| T |
24103448 |
gcctaattatccacaaaaaagggttcttgctattggccaaaccccaagcaaa |
24103499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 3261 - 3162
Alignment:
| Q |
49 |
ggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcac-tgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttcttgc |
147 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||| || ||||| ||| ||| |||||||||||||| |||| |||| ||||||||| ||| |||||||||| |
|
|
| T |
3261 |
ggcctctatctgaagtttcattctcaaactcatataacaaag-cacatgatccgccaatgacaaggtcagacctaatgatccacacaaagggtttcttgc |
3163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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