View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_low_20 (Length: 241)
Name: NF11054_low_20
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39576094 - 39575868
Alignment:
| Q |
1 |
agtgcatagaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaacttgaatttgtcagtgcaaggaacacgagctataataaatt |
100 |
Q |
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| T |
39576094 |
agtgcatagaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaacttgaatttgtcagtgcaaggaacacgagctataataaatt |
39575995 |
T |
|
| Q |
101 |
gatctctgaatactattcgttcatgtgaaatcggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaattttgtctacaacgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39575994 |
gatctctgaatactattcgttcatgtgaaatcggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaattttgtctacaacgatt |
39575895 |
T |
|
| Q |
201 |
cgaaagtagcaatatgccatcacaagt |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
39575894 |
cgaaagtagcaatatgccatcacaagt |
39575868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 39572084 - 39571862
Alignment:
| Q |
5 |
catagaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaacttgaatttgtcagtgcaaggaacacgagctataataaattgatc |
104 |
Q |
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|||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39572084 |
catagaaaacataccaaaaaacacctgaaaccatagggataactttagagaacaacttgaatttgtcagtgcaaggaacacgaactataataaattgatc |
39571985 |
T |
|
| Q |
105 |
tctgaatactattcgttcatgtgaaatcggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaattttgtctacaacgattcgaa |
204 |
Q |
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| T |
39571984 |
tcttaataccattcgttcatgtgaaatcggaaaaagaggaatcctgagccaacacttgaggatagagttcacgacgatattttctctacaaccattcgaa |
39571885 |
T |
|
| Q |
205 |
agtagcaatatgccatcacaagt |
227 |
Q |
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||||||||||||||||||||||| |
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| T |
39571884 |
agtagcaatatgccatcacaagt |
39571862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 9860237 - 9860187
Alignment:
| Q |
133 |
ggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaa |
183 |
Q |
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|||||| ||||||| ||||||||||| ||||||| ||||||||| |||||| |
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| T |
9860237 |
ggaaaaggaggaattctaagccaacacttgaggagggggttcaccacgaaa |
9860187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 9841716 - 9841628
Alignment:
| Q |
5 |
catagaaaacataccaaaaagcacctgaaaccacatggataactagagagaacaacttgaatttgtcagtgcaaggaacacgagctata |
93 |
Q |
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||||||||||||||||| ||||||| |||||| || ||| | ||| | ||| | |||||||||| ||||| ||||||||| |||||| |
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| T |
9841716 |
catagaaaacataccaacaagcacccgaaacctcaaggacatctataaggaaaagcttgaatttggaagtgcgaggaacacgtgctata |
9841628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 7256436 - 7256398
Alignment:
| Q |
141 |
aggaatcctaagccaacatttgaggatggggttcacgac |
179 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||| |
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| T |
7256436 |
aggaattctaagccaacacttgaggatggggttcacgac |
7256398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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