View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11054_low_3 (Length: 460)
Name: NF11054_low_3
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11054_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 25356781 - 25357216
Alignment:
| Q |
17 |
aaattggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctattactagtcctcctcaccacctttaaatccaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356781 |
aaattggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctattactagtcctcctcaccacctttaaatccaa |
25356880 |
T |
|
| Q |
117 |
ctttcttgtaannnnnnnnnnnnnnnnnnnnnnctacaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaa |
216 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356881 |
ctttcttgtaacttttttctttcttttcttttcctacaacatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaa |
25356980 |
T |
|
| Q |
217 |
tgaagatatgaagactcacataagatggtaaagggttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356981 |
tgaagatatgaagactcacataagatggtaaagggttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagc |
25357080 |
T |
|
| Q |
317 |
cgacatatttccatcagcagacactttttcattctggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatctta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25357081 |
cgacatatttccatcagcagacactttttcattctggttgagaggctctccatcaacaagcacttctggttgttgttgatctaattctttggtaatctta |
25357180 |
T |
|
| Q |
417 |
taacatgcatcgcgtctttttgtttttctctctgct |
452 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
25357181 |
taacatgcatcgcgtctttttgtttttctctttgct |
25357216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 452
Target Start/End: Original strand, 25352125 - 25352554
Alignment:
| Q |
30 |
tgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctattactagtcctcctcaccacctttaaatccaactttcttgtaann |
129 |
Q |
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||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||| |
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| T |
25352125 |
tgcatctcttccaggaccattatatacttttttgaaggccaaggttctcaatctattactagtcctccttaccttctataaatccaattttcttgtaacc |
25352224 |
T |
|
| Q |
130 |
nnnnnnnnnnnnnnnnnnnnctacaatatccaagagaggtgttacataaagtccattattaagtaactaa-taagaattgaaataaaatgaagatatgaa |
228 |
Q |
| |
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||||||||||||||||| |||||||| ||||| |||||| | ||| ||| ||||||||||||||||||||||||||||| |
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| T |
25352225 |
tttttctttcttttcttttcctacaatatccaagagatgtgttacagaaagtacattatatattaagtaactaagaattgaaataaaatgaagatatgaa |
25352324 |
T |
|
| Q |
229 |
gactcacataagatggtaaagg---gttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatt |
325 |
Q |
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|||||||||||||||||| ||| |||||||||||||| |||||||| ||| || ||||||| ||||||||||| |||||||| ||| |||||| |
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| T |
25352325 |
gactcacataagatggtacaggcgggttagggtcagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatc |
25352424 |
T |
|
| Q |
326 |
tccatcagcagacactttttcattctggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgca |
425 |
Q |
| |
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|||| ||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
25352425 |
gtcatcggcagatacttcttgattatggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattcttctgtcttcttataacatgca |
25352524 |
T |
|
| Q |
426 |
tcgcg---tctttttgtttttctctctgct |
452 |
Q |
| |
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||||| ||||||||||||||||| |||| |
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| T |
25352525 |
tcgcgtcttctttttgtttttctctttgct |
25352554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 152 - 291
Target Start/End: Original strand, 25349711 - 25349846
Alignment:
| Q |
152 |
acaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaaggg |
251 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25349711 |
acaatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaaggg |
25349810 |
T |
|
| Q |
252 |
ttagggtcagcagttgttggtacaaggttcactacagaaa |
291 |
Q |
| |
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| |||||||| ||||||||||||| || |||||||||| |
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| T |
25349811 |
t--gggtcagc--ttgttggtacaagatttactacagaaa |
25349846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 25349575 - 25349672
Alignment:
| Q |
18 |
aattggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctattactagtcctcctcaccacctttaaatccaa |
116 |
Q |
| |
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||||||||| | ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25349575 |
aattggactagttgcatctctcccag-accatcatatacttttttgaaggccaaggttctcaatctattactagtcctcctcaccatctttaaatccaa |
25349672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 25361452 - 25361528
Alignment:
| Q |
19 |
attggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctattactagtcct |
95 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||| |
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| T |
25361452 |
attggactgcttgcatctctcccaggaccatcatatgatcttttgaaggtcaaggttctcaatctatcactagtcct |
25361528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 25361580 - 25361649
Alignment:
| Q |
150 |
ctacaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
222 |
Q |
| |
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||||||||||||| |||| |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
25361580 |
ctacaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
25361649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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