View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11054_low_4 (Length: 452)

Name: NF11054_low_4
Description: NF11054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11054_low_4
NF11054_low_4
[»] chr1 (6 HSPs)
chr1 (205-450)||(49400110-49400355)
chr1 (208-315)||(49399549-49399656)
chr1 (205-333)||(27890568-27890696)
chr1 (205-333)||(27891227-27891355)
chr1 (204-269)||(49385084-49385149)
chr1 (205-269)||(1764516-1764580)
[»] chr5 (6 HSPs)
chr5 (1-204)||(30866675-30866878)
chr5 (6-156)||(31194267-31194417)
chr5 (205-348)||(129280-129423)
chr5 (147-204)||(31193908-31193965)
chr5 (207-305)||(128663-128761)
chr5 (204-269)||(31600447-31600512)
[»] chr4 (10 HSPs)
chr4 (204-450)||(52237634-52237874)
chr4 (205-313)||(52238270-52238378)
chr4 (207-315)||(53327458-53327566)
chr4 (211-315)||(48957414-48957518)
chr4 (205-333)||(55633554-55633682)
chr4 (204-269)||(5469968-5470033)
chr4 (204-269)||(48956636-48956701)
chr4 (260-348)||(53320061-53320149)
chr4 (205-279)||(36386029-36386103)
chr4 (203-279)||(53320718-53320794)
[»] chr2 (4 HSPs)
chr2 (205-425)||(20267165-20267385)
chr2 (205-425)||(20268838-20269058)
chr2 (205-379)||(33361047-33361222)
chr2 (389-425)||(33361204-33361240)
[»] chr3 (10 HSPs)
chr3 (204-392)||(44321436-44321626)
chr3 (205-369)||(23514390-23514554)
chr3 (205-315)||(23513688-23513798)
chr3 (205-333)||(16436524-16436652)
chr3 (205-269)||(8923631-8923695)
chr3 (237-305)||(54706952-54707020)
chr3 (205-269)||(41326544-41326608)
chr3 (204-269)||(8922883-8922948)
chr3 (205-269)||(41325822-41325886)
chr3 (205-269)||(50107568-50107632)
[»] chr7 (8 HSPs)
chr7 (210-348)||(45431064-45431202)
chr7 (204-334)||(45431753-45431883)
chr7 (205-315)||(32249345-32249455)
chr7 (215-292)||(22492483-22492560)
chr7 (282-334)||(42404634-42404686)
chr7 (204-269)||(23752803-23752868)
chr7 (237-305)||(32492591-32492659)
chr7 (205-269)||(48204147-48204211)
[»] chr8 (3 HSPs)
chr8 (205-348)||(17626274-17626416)
chr8 (204-305)||(17625633-17625734)
chr8 (205-269)||(38443034-38443098)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 205 - 450
Target Start/End: Complemental strand, 49400355 - 49400110
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||| |||||||  |||||||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  49400355 gagtccatctttgctccatttgcctttgctcaatttatcccatttaccttcatgcatgtgtgacacatgttaaaagaatatccaacggttgaaattaaaa 49400256  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacacggtctctgtattttttccagatctgttgcctctctgtatattttccataactgatg 404  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49400255 aaggaaagataaacaaacacgcatgtgattaattctagaaacacgacctctgtattttttccagatctgttgcctctctgtatattttccataactgatg 49400156  T
Q  405 catatttcaaaatagaagaagcttcattttcggcggtggatctctg 450  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  49400155 catatttcaaaatataagaagcttcattttcggcggtggatctctg 49400110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 49399549 - 49399656
Alignment:
Q  208 tccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaaag 307  Q
    ||||||||||||||||||| |||||||  ||||| |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |    
T  49399549 tccatctttgctccatttgcctttgctcaatttaccccatttaccttgatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagg 49399648  T
Q  308 gaaagata 315  Q
    ||||||||    
T  49399649 gaaagata 49399656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 27890568 - 27890696
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||| |||||||  |||||||| ||||| | |||||||||||||||| |||  ||||   |||| |||||||||||||||||    
T  27890568 gagtccatctttgctccatttgcctttgctcaatttatcctatttaccatcatggatgtgtgacatgtggcaaaatagtatcaaacggttgaaattaaaa 27890667  T
Q  305 aaggaaagataaacaaacacacatgtgat 333  Q
    |   ||  ||||||||| |||||||||||    
T  27890668 agacaataataaacaaatacacatgtgat 27890696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 27891355 - 27891227
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||  |||| ||  |||||||||||||| |  ||||||||| ||||| |||  ||||   ||||||||| ||||||||||||    
T  27891355 gagtccatctttgctccatttatctttactcaatttatcccatttaccaacatggatgtctgacatgtggcaaaatagtatccaacgattgaaattaaaa 27891256  T
Q  305 aaggaaagataaacaaacacacatgtgat 333  Q
      | ||  |||||||||||||||||||||    
T  27891255 gggcaataataaacaaacacacatgtgat 27891227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 49385084 - 49385149
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||||||||||||||||||||   ||||| | ||||| ||||||||   ||||||||||||||||    
T  49385084 cgagtccatctttgctccatttaagtttgcatcatttaccccatttacaatcatggatgtgtgaca 49385149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 1764516 - 1764580
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    |||||||||||||||||||||   ||||||  ||||| || ||||||| |||||||||| |||||    
T  1764516 gagtccatctttgctccatttaagtttgctcaatttaccctatttatcatcatggatgtatgaca 1764580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30866675 - 30866878
Alignment:
Q  1 tacctaagcttgaaaacgaccaccagccaaccgtttcttacattctagatacaatattagtttatgttattcatttgtataatcatgaaacaaaataacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30866675 tacctaagcttgaaaacgaccaccagccaaccgtttcttacattctagatacaatattagtttatgttattcatttgtataatcatgaaataaaataacc 30866774  T
Q  101 cataactataatttaaaatgttttgtttgtttttgtaatatagacccaccaaccacttccaaacaagaccacaattttgaattttaatacggaatcatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30866775 cataactataatttaaaatgttttgtttgtttttgtaatatagacccaccaaccacttccaaacaagaccacaattttgaattttaatacggaatcatgg 30866874  T
Q  201 accc 204  Q
    ||||    
T  30866875 accc 30866878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 31194417 - 31194267
Alignment:
Q  6 aagcttgaaaacgaccaccagccaaccgtttcttacattctagatacaatattagtttatgttattcatttgtataatcatgaaacaaaataacccataa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31194417 aagcttgaaaacgaccaccagccaaccgtttcttacattctagatacaatattagtttatgttattcatttgtataatcatgatataaaataacccataa 31194318  T
Q  106 ctataatttaaaatgttttgtttgtttttgtaatatagacccaccaaccac 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31194317 ctataatttaaaatgttttgtttgtttttgtaatatagacccaccaaccac 31194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 348
Target Start/End: Complemental strand, 129423 - 129280
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||| ||||||||||||| ||||||   ||||| | |||||||| |||||||||||||||||||| || |   |||||||||||||||||| ||||    
T  129423 gagtccatatttgctccatttgtctttgcaccatttacctcatttatcatcatggatgtgtgacacgtgatatactaatatccaacggttgaaataaaaa 129324  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacac 348  Q
    |   ||  ||||||||||||||||||||||  || |||||||||    
T  129323 agacaacaataaacaaacacacatgtgattgcttttagaaacac 129280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 31193965 - 31193908
Alignment:
Q  147 caccaaccacttccaaacaagaccacaattttgaattttaatacggaatcatggaccc 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31193965 caccaaccccttccaaacaagaccacaattttgaattttaatacggaatcatggaccc 31193908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 305
Target Start/End: Original strand, 128663 - 128761
Alignment:
Q  207 gtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaa 305  Q
    ||||||||||||||||||| |  ||||   |||||| ||||||| |||||| |||||| ||||||||| ||||| ||||| || |||||||||| ||||    
T  128663 gtccatctttgctccatttaggcttgcaccatttattccatttaccttcatagatgtgcgacacgtgtcaaaagaatatcgaatggttgaaatttaaaa 128761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 31600447 - 31600512
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||||||||  |||||||||| |  |||||  ||||| |||||||||| ||||||||||||||||    
T  31600447 cgagtccatccatgctccatttagacttgctccatttaccccatttatcatcatggatgtgtgaca 31600512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 204 - 450
Target Start/End: Original strand, 52237634 - 52237874
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaa 303  Q
    |||||| |||||||||||||||| |||||||  ||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||    
T  52237634 cgagtctatctttgctccatttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacatgttaaaagaatatccaacagttgaaatt-aa 52237732  T
Q  304 aaaggaaagataaacaaacacacatgtgattaattctagaaacacggtctctgtattttttccagatctgttgcctctctgtatattttccataactgat 403  Q
    |||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||||||||    |||||||| | ||| |||||||||||||||    
T  52237733 aaaggaaagataaacaaacacacatgtgattacttttagaaacacaatctctgtattttttccaga----ttgcctctgtatat-ttttccataactgat 52237827  T
Q  404 gcatatttcaaaatagaagaagcttcattttcggcggtggatctctg 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  52237828 gcatatttcaaaatagaagaagcttcattttcggcggtggatctctg 52237874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 52238378 - 52238270
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    ||||||||||||||| |||||| |||||||  ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  52238378 gagtccatctttgcttcatttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaa 52238279  T
Q  305 aaggaaaga 313  Q
    | |||||||    
T  52238278 agggaaaga 52238270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 53327458 - 53327566
Alignment:
Q  207 gtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaaa 306  Q
    ||||||||||||||||||| | | ||||| ||||||| |||||| ||||| ||||||||||||  ||||||||| |||||||| |||||||||||||||     
T  53327458 gtccatctttgctccatttagatatgcttcatttatctcatttaccttcacggatgtgtgacatttgttaaaagaatatccaatggttgaaattaaaaag 53327557  T
Q  307 ggaaagata 315  Q
    |||||||||    
T  53327558 ggaaagata 53327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 48957518 - 48957414
Alignment:
Q  211 atctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaaaggaa 310  Q
    ||||||||| ||||| | | ||||  ||||| |||||||| ||||| ||||||| |||| |||||||||| |||||||| ||||||||||||||| ||||    
T  48957518 atctttgcttcatttagatatgctccatttaacccatttaccttcacggatgtgcgacatgtgttaaaagaatatccaatggttgaaattaaaaagggaa 48957419  T
Q  311 agata 315  Q
    |||||    
T  48957418 agata 48957414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 55633554 - 55633682
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    ||||||||||||||||| |||| |||||||  |||||||||||||| | ||||||||||||||||  ||  ||||   |||| |||||||||||||||||    
T  55633554 gagtccatctttgctccgtttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatagtatcaaacggttgaaattaaaa 55633653  T
Q  305 aaggaaagataaacaaacacacatgtgat 333  Q
    |   ||  ||||||||| |||||||||||    
T  55633654 agacaataataaacaaatacacatgtgat 55633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 5470033 - 5469968
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||||||||||||||||||||   ||||||  |||||||||||||| | | ||||||||||||||    
T  5470033 cgagtccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgaca 5469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 48956636 - 48956701
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    |||||||||||||  ||||||| | | || || ||||| |||||||||||||||||||||||||||    
T  48956636 cgagtccatctttattccatttagatatgtttaatttaccccatttatcttcatggatgtgtgaca 48956701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 53320061 - 53320149
Alignment:
Q  260 atgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaaaggaaagataaacaaacacacatgtgattaattctagaaacac 348  Q
    |||||||||||||| || ||  ||||||||| |||||||| |||||   ||  ||||||||||||||||||||||  || |||||||||    
T  53320061 atgtgtgacacgtggtataataatatccaacagttgaaataaaaaagacaacaataaacaaacacacatgtgattgcttttagaaacac 53320149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 36386103 - 36386029
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaa 279  Q
    |||| ||||||||||||||||  |||||||  ||||| ||||||| |  |||||||||||||||| |||| ||||    
T  36386103 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtcatggatgtgtgacatgtgtaaaaa 36386029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 53320794 - 53320718
Alignment:
Q  203 ccgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaa 279  Q
    ||||||||||||||||||| ||| |  |||  | ||||| | |||||| ||||||||||||| ||||||||| ||||    
T  53320794 ccgagtccatctttgctccttttaggcttggatcatttacctcatttaccttcatggatgtgcgacacgtgtaaaaa 53320718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 205 - 425
Target Start/End: Original strand, 20267165 - 20267385
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  20267165 gagtccatctttgctccatttacctttgctcaatttatctcatttatcttcatggatgtgcgacacatgttaaaagaatatccaacggttgaaattaaaa 20267264  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacacggtctctgtattttttccagatctgttgcctctctgtat-attttccataactgat 403  Q
    | |||||||||||||||||||||| |||||  || |||||||||  ||||| |  |||||||||| |||||| ||||||||||  ||||||| |||||||    
T  20267265 agggaaagataaacaaacacacatatgattgcttttagaaacacaatctctat-ctttttccagaactgttggctctctgtatctttttccagaactgat 20267363  T
Q  404 gcatatttcaaaatagaagaag 425  Q
    || |||||||||||||||||||    
T  20267364 gcctatttcaaaatagaagaag 20267385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 205 - 425
Target Start/End: Complemental strand, 20269058 - 20268838
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  20269058 gagtccatctttgctccatttacctttgctcaatttatctcatttatcttcatggatgtgcgacacatgttaaaagaatatccaacggttgaaattaaaa 20268959  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacacggtctctgtattttttccagatctgttgcctctctgtat-attttccataactgat 403  Q
    | |||||||||||||||||||||| |||||  || |||||||||  ||||| |  |||||||||| |||||| ||||||||||  ||||||| |||||||    
T  20268958 agggaaagataaacaaacacacatatgattgcttttagaaacacaatctctat-ctttttccagaactgttggctctctgtatctttttccagaactgat 20268860  T
Q  404 gcatatttcaaaatagaagaag 425  Q
    || |||||||||||||||||||    
T  20268859 gcctatttcaaaatagaagaag 20268838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 205 - 379
Target Start/End: Original strand, 33361047 - 33361222
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||  |||||||  |||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  33361047 gagtccatctttgctccatttacctttgctcaatttataccatttaccttcatggatgtgtgacacatgttaaaagaatatccaacggttgaaattaaaa 33361146  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacacggtctctgtat-tttttccagatctgttgcct 379  Q
    | ||||||||||||||||||||||| ||||  || |||||||||  ||| ||||| |||||||||| ||| |||||    
T  33361147 agggaaagataaacaaacacacatgcgattggttttagaaacacaatctttgtatctttttccagaactgatgcct 33361222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 33361204 - 33361240
Alignment:
Q  389 ttttccataactgatgcatatttcaaaatagaagaag 425  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  33361204 ttttccagaactgatgcctatttcaaaatagaagaag 33361240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 204 - 392
Target Start/End: Complemental strand, 44321626 - 44321436
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaa 303  Q
    |||||||||||||||||||||||  ||||||  ||||| |||||||| |||||| |||||||||||||||||||||| |||| ||| |||||||||||||    
T  44321626 cgagtccatctttgctccatttgcttttgctcaattta-cccatttaccttcattgatgtgtgacacgtgttaaaagaatattcaatggttgaaattaaa 44321528  T
Q  304 aaaggaaagataaacaaacacacatgtgattaattctagaaacac-ggtctctg--tattttttccagatctgttgcctctctgtatatttt 392  Q
    || | |||||||||||||||||||||| |||  || |||||||||   ||||||  | |||||||||||  |||||||||||||||| ||||    
T  44321527 aaggaaaagataaacaaacacacatgtcattgcttttagaaacacaaatctctggatcttttttccagaagtgttgcctctctgtatctttt 44321436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 369
Target Start/End: Complemental strand, 23514554 - 23514390
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||| |||||||  ||||| ||||||||   |||||||||||||||| |||  ||||  ||||| |||||||||||| ||||    
T  23514554 gagtccatctttgctccatttgcctttgctcaatttaccccatttactatcatggatgtgtgacatgtggcaaaaaaatatctaacggttgaaataaaaa 23514455  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacacggtctctgtattttttccaga 369  Q
    | | ||  ||||||||||||||||||||||  || ||||||||   ||||| |||||||||||||    
T  23514454 aggcaacaataaacaaacacacatgtgattgcttttagaaacaaaatctctatattttttccaga 23514390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 23513688 - 23513798
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||| |||||||||  |||||||||| ||| | ||||| || ||||||||||||||    
T  23513688 gagtccatctttgctccatttatctttgctcaatttatcccatttatcatcatggatgcatgacacgtgtcaaaggaatatctaatggttgaaattaaaa 23513787  T
Q  305 aaggaaagata 315  Q
    | ||| |||||    
T  23513788 agggagagata 23513798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 16436524 - 16436652
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    ||||||||||||||||| |||| |||||||  |||||||||||||| | ||||||||||||||||  ||  ||||   |||| |||||||||||||||||    
T  16436524 gagtccatctttgctccgtttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatagtatcaaacggttgaaattaaaa 16436623  T
Q  305 aaggaaagataaacaaacacacatgtgat 333  Q
    |   ||  ||||||||| |||||||||||    
T  16436624 agacaataataaacaaatacacatgtgat 16436652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 8923695 - 8923631
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||||||||||||||||||||| ||||||  ||||| |||||||| | ||||||||||||||||    
T  8923695 gagtccatctttgctccatttgggtttgctccatttaccccatttaccatcatggatgtgtgaca 8923631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 54706952 - 54707020
Alignment:
Q  237 atttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaa 305  Q
    ||||||||||||||   ||||||||||||||||| ||| ||||  ||||||||||||||||||||||||    
T  54706952 atttatcccatttacgatcatggatgtgtgacacatgtcaaaataatatccaacggttgaaattaaaaa 54707020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 41326608 - 41326544
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||||||||||||||||||||| ||||||  ||||| || ||||| | ||||||||||||||||    
T  41326608 gagtccatctttgctccatttgggtttgctccatttacccaatttaccatcatggatgtgtgaca 41326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 8922883 - 8922948
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||| ||||||| |||||||| | ||||||  ||||| |||||||||| ||||||||||||||||    
T  8922883 cgagttcatctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgaca 8922948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 41325822 - 41325886
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    |||| ||||||| |||||||| | ||||||  ||||| |||||||||| ||||||||||||||||    
T  41325822 gagttcatctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgaca 41325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 50107568 - 50107632
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    |||| ||||||| || ||||| | ||||||  ||||| |||||||||| ||||||||||||||||    
T  50107568 gagttcatctttactacatttaggtttgctcaatttaccccatttatcatcatggatgtgtgaca 50107632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 348
Target Start/End: Original strand, 45431064 - 45431202
Alignment:
Q  210 catctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaaagga 309  Q
    ||||||||||||||||| |||||||  |||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||| ||||| | |    
T  45431064 catctttgctccatttgtctttgctcaatttatcccatttaccatcatggatgtgtgacacgtgttaaaataatatccaacggttgaaataaaaaaggca 45431163  T
Q  310 aagataaacaaacacacatgtgattaattctagaaacac 348  Q
    |  |||||||||||| |||||||||  || |||||||||    
T  45431164 acaataaacaaacacccatgtgattgcttttagaaacac 45431202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 45431883 - 45431753
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaa 303  Q
    |||||| |||||||||||||||| |||||||  ||||| | |||||| | |||||||||||||| |||||||||||  |||||||| ||| ||||| |||    
T  45431883 cgagtcaatctttgctccatttgcctttgctccatttaactcatttaccatcatggatgtgtgatacgtgttaaaataatatccaatggtcgaaataaaa 45431784  T
Q  304 aaaggaaagataaacaaacacacatgtgatt 334  Q
    || | ||  ||||||||||||||||||||||    
T  45431783 aaggcaacaataaacaaacacacatgtgatt 45431753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 32249345 - 32249455
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    ||||||||||||| |||||||| ||||| |  ||||| |||||||   ||||| |||||||||||| ||||||||| |||||||| ||||||||||||||    
T  32249345 gagtccatctttgttccatttgcctttgttcaatttaccccatttcctttcatagatgtgtgacacttgttaaaagaatatccaatggttgaaattaaaa 32249444  T
Q  305 aaggaaagata 315  Q
    | | |||||||    
T  32249445 aggtaaagata 32249455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 22492560 - 22492483
Alignment:
Q  215 ttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacgg 292  Q
    |||||||||||| |||||||  |||||||||||||| | |||||||||||||||||||| |||||  |||||||||||    
T  22492560 ttgctccatttgcctttgctccatttatcccatttaccatcatggatgtgtgacacgtgctaaaataatatccaacgg 22492483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 42404634 - 42404686
Alignment:
Q  282 atatccaacggttgaaattaaaaaaggaaagataaacaaacacacatgtgatt 334  Q
    ||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  42404634 atatccaacggctgaaattaaaaagggaaaaataaagaaacacacatgtgatt 42404686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 23752868 - 23752803
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    ||||| |||||||||| | |||  |||||||  |||||||||||||| | ||||||||||||||||    
T  23752868 cgagtgcatctttgcttcttttacctttgctcaatttatcccatttaccatcatggatgtgtgaca 23752803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 32492591 - 32492659
Alignment:
Q  237 atttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaaa 305  Q
    ||||| |||||| | ||| |||||||||||||| |||  ||||  |||||||||||||||| |||||||    
T  32492591 atttaccccattgacctttatggatgtgtgacatgtggcaaaataatatccaacggttgaatttaaaaa 32492659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 48204147 - 48204211
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    |||||||||||||||||||||   ||||||  |||||||| ||||| | |||||||||| |||||    
T  48204147 gagtccatctttgctccatttaagtttgctccatttatcctatttaccatcatggatgtatgaca 48204211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 348
Target Start/End: Complemental strand, 17626416 - 17626274
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaaa 304  Q
    |||||||| ||||||||||||| ||||||   ||||| |||||||| | |||||||||||||||||||| || ||  |||||||||||||||||| ||||    
T  17626416 gagtccat-tttgctccatttgtctttgcaccatttaccccatttaccatcatggatgtgtgacacgtggtataataatatccaacggttgaaataaaaa 17626318  T
Q  305 aaggaaagataaacaaacacacatgtgattaattctagaaacac 348  Q
    |   ||  ||||||||||||||||||||||  || |||||||||    
T  17626317 agacaacaataaacaaacacacatgtgattgcttttagaaacac 17626274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 17625633 - 17625734
Alignment:
Q  204 cgagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgacacgtgttaaaaggatatccaacggttgaaattaaa 303  Q
    |||||||||||||||||||||| |  ||||   ||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||  ||||||||||||    
T  17625633 cgagtccatctttgctccatttaggcttgcaccatttaccccatttaccttcatggatgtgcgacacgtgtcaaaagaatatccaatagttgaaattaaa 17625732  T
Q  304 aa 305  Q
    ||    
T  17625733 aa 17625734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 38443034 - 38443098
Alignment:
Q  205 gagtccatctttgctccatttggctttgcttgatttatcccatttatcttcatggatgtgtgaca 269  Q
    |||||||||||||||||||||   | ||||  ||||| |||||||| | ||||||||||||||||    
T  38443034 gagtccatctttgctccatttaagtctgctccatttaccccatttaccatcatggatgtgtgaca 38443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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