View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11055_high_11 (Length: 329)
Name: NF11055_high_11
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 30227945 - 30227645
Alignment:
| Q |
12 |
agagaagaatgagaagacaaaaacatcaaattccacagctgtggtaatgctcaacacaagaaatattggaggctaccaatcagtgaaggaaatgcaaaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30227945 |
agagaagaatgagaagacaaaaacatcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccaatcagtgaaggaaatgcaaaaa |
30227846 |
T |
|
| Q |
112 |
ccagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaaccctcttgagtttgttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30227845 |
ccagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaatcctcttgagtttgttt |
30227746 |
T |
|
| Q |
212 |
ggaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatgaagttaagggggtctgaggt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30227745 |
ggaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatgaagttaagggggtctgaggt |
30227646 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
30227645 |
g |
30227645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 30031318 - 30031038
Alignment:
| Q |
12 |
agagaagaatgagaagacaaaaacatcaaattccacagctgtggtaatgctcaacacaagaaatattggaggctaccaatcagtgaaggaaatgcaaaaa |
111 |
Q |
| |
|
||||| ||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
30031318 |
agagatgaatgagaaaacaaaaatagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaa |
30031219 |
T |
|
| Q |
112 |
ccagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaaccctcttgagtttgttt |
211 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30031218 |
ccagagtccaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagccaatcagtaatctccaaccctcttgagtttgttt |
30031119 |
T |
|
| Q |
212 |
ggaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatga |
292 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
30031118 |
ggaattctcgtgaactaatcaagaggaagagacattctttcagtgtttatcttatagctttgctcatggatttggagatga |
30031038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 30047589 - 30047309
Alignment:
| Q |
12 |
agagaagaatgagaagacaaaaacatcaaattccacagctgtggtaatgctcaacacaagaaatattggaggctaccaatcagtgaaggaaatgcaaaaa |
111 |
Q |
| |
|
||||| ||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
30047589 |
agagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaa |
30047490 |
T |
|
| Q |
112 |
ccagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaaccctcttgagtttgttt |
211 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||||| | | |||||| ||||||||| |||||||||||||||| |
|
|
| T |
30047489 |
ccagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcagtaatctccaatcctcttgagtttgttt |
30047390 |
T |
|
| Q |
212 |
ggaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatga |
292 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| |
|
|
| T |
30047389 |
ggaattcccgtgaactaatcaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagatga |
30047309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 30061930 - 30061650
Alignment:
| Q |
12 |
agagaagaatgagaagacaaaaacatcaaattccacagctgtggtaatgctcaacacaagaaatattggaggctaccaatcagtgaaggaaatgcaaaaa |
111 |
Q |
| |
|
||||| ||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
30061930 |
agagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaa |
30061831 |
T |
|
| Q |
112 |
ccagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaaccctcttgagtttgttt |
211 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||||| | | |||||| ||||||||| |||||||||||||||| |
|
|
| T |
30061830 |
ccagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcagtaatctccaatcctcttgagtttgttt |
30061731 |
T |
|
| Q |
212 |
ggaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatga |
292 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| |
|
|
| T |
30061730 |
ggaattcccgtgaactaatcaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagatga |
30061650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 30221532 - 30221816
Alignment:
| Q |
18 |
gaatgagaagacaaaaacatcaaattccacagctgtggtaatgctcaacacaagaaatattggaggctaccaatcagtgaaggaaatgcaaaaaccagag |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
30221532 |
gaatgagaagacaaaaaaatcaaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagag |
30221631 |
T |
|
| Q |
118 |
tccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaaccctcttgagtttgtttggaata |
217 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
30221632 |
tccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaagccaatca---------gaccctcttgagtttgtttggaaag |
30221722 |
T |
|
| Q |
218 |
ctcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatgaagttaagggggtctgaggt |
311 |
Q |
| |
|
||||| | ||||||| ||||||||||| |||||| ||||||||||||||| |||||||||| ||||||| ||||| |||| ||||||||||| |
|
|
| T |
30221723 |
ctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatctcataggtttgctcttgaatttggagatgaaattaaaagggtctgaggt |
30221816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University