View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_high_2 (Length: 553)
Name: NF11055_high_2
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Original strand, 47150988 - 47151513
Alignment:
| Q |
20 |
tttacatctttcttcaaaccaaccctgttttggaaactgctcgaagagaatctattgaatggattctcaaagtgaatgctcattactctttctcagctct |
119 |
Q |
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| T |
47150988 |
tttacatctttcttcaaaccaaccctgttttggaaactgctcgaagagaatctattgaatggattctcaaagtgaatgctcattactctttctcagctct |
47151087 |
T |
|
| Q |
120 |
tactgccgttcttgctgtcaactaccttgataggtttctattcagctttcgttttcagaatgagaagccatggatgactcagcttgcagctgttgcttgt |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47151088 |
tacttccgttcttgctgtcaactaccttgataggtttctattcagctttcgttttcagaatgagaagccatggatgactcagcttgcagctgttgcttgt |
47151187 |
T |
|
| Q |
220 |
ctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtttcatcttaactcttgcaaagttgcaagaaacaaaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47151188 |
ctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtttcatcttaactcttgcaaagttgcaagaaacaaaaa |
47151287 |
T |
|
| Q |
320 |
gaactaaactaatttgttttgaaattttgtttaggttgaagagagtagatacttgtttgaagcaaaaacgattaaaaagatggaaattttgatactttca |
419 |
Q |
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| T |
47151288 |
gaactaaac---tttgttttgaaattttgtttaggttgaagagagtagatacttgtttgaagcaaaaacgattaaaaagatggaaattttgatactttca |
47151384 |
T |
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| Q |
420 |
actcttggatggaagatgagtccagcaacacctctttcttttattgattttatcataagaagacttggattgaaagatcatctaatttgttgggagttcc |
519 |
Q |
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| T |
47151385 |
actcttggatggaagatgaatccagcaacacctctttcttttattgattttatcataagaagacttggattgaaagaccatctaatttgttgggagtttc |
47151484 |
T |
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| Q |
520 |
ttaagagatgtgaaggtgttcttctctct |
548 |
Q |
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| T |
47151485 |
ttaagagatgtgaaggtgttcttctctct |
47151513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 283
Target Start/End: Complemental strand, 48851198 - 48850989
Alignment:
| Q |
74 |
ttgaatggattctcaaagtgaatgctcattactctttctcagctcttactgccgttcttgctgtcaactaccttgataggtttctattcagctttcgttt |
173 |
Q |
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|||||||||| || ||||| ||||||||||| |||||| ||||| ||||| |||||||| || || |||||||||||||| | ||||| | ||| |
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| T |
48851198 |
ttgaatggatgcttaaagtcaatgctcattatggtttctctgctctcactgcaacacttgctgttaattatcttgataggtttcttctaagcttccattt |
48851099 |
T |
|
| Q |
174 |
tcagaatgagaagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatctt |
273 |
Q |
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||| || |||||||||||||||| |||||||| |||||| |||| | ||| | ||||||||| | ||||| || || ||||||||| | |||| ||| |
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| T |
48851098 |
tcaaaaggagaagccatggatgattcagcttgttgctgttacttgcatctctttagctgctaaagttgaagaaactcaagttcctcttctcttagacctt |
48850999 |
T |
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| Q |
274 |
caagtatgtt |
283 |
Q |
| |
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|||||||||| |
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| T |
48850998 |
caagtatgtt |
48850989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 52794533 - 52794464
Alignment:
| Q |
184 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
254 |
Q |
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| T |
52794533 |
aagccatggatcactcagattcctg-tgtttcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
52794464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 39337226 - 39337325
Alignment:
| Q |
184 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtt |
283 |
Q |
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||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||||| |||||||| || ||| | | ||| |||||||||||| |
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| T |
39337226 |
aagccttggatgactcagctcactgctgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgtgccacttcttttggattttcaagtatgtt |
39337325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 23703200 - 23703270
Alignment:
| Q |
184 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
254 |
Q |
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| T |
23703200 |
aagccatggatcactcaggttactgctgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
23703270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 55018597 - 55018667
Alignment:
| Q |
184 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
254 |
Q |
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||||||||||| ||||||||| | | |||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
55018597 |
aagccatggatcactcagcttactgttgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
55018667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 35785936 - 35785838
Alignment:
| Q |
184 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
282 |
Q |
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||||||||||| |||||| || | | |||||||||| | ||||||||||||||||||||||| | |||||| || ||| | | ||| ||||||||||| |
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| T |
35785936 |
aagccatggatcactcagattactgttgttgcttgtttgtctcttgctgctaaaatggaagaaatccatgtgccacttcttttggattttcaagtatgt |
35785838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 38157864 - 38157930
Alignment:
| Q |
188 |
catggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
254 |
Q |
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||||||| ||||| ||| | | |||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
38157864 |
catggatcactcatcttactgttgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
38157930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 7107762 - 7107834
Alignment:
| Q |
210 |
tgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
282 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||| || ||| | | ||| ||||||||||| |
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| T |
7107762 |
tgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgtgccacttcttttggattttcaagtatgt |
7107834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 21143311 - 21143409
Alignment:
| Q |
184 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
282 |
Q |
| |
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||||||||||| |||||| || | | |||||||||| | ||||||||||||||||||||||| || ||||| || ||| | | ||| ||||||||||| |
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| T |
21143311 |
aagccatggatcactcagattactgttgttgcttgtttgtctcttgctgctaaaatggaagaaactcatgtgccacttcttttggattttcaagtatgt |
21143409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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