View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_high_8 (Length: 403)
Name: NF11055_high_8
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 14741854 - 14742232
Alignment:
| Q |
19 |
actcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgt |
118 |
Q |
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| T |
14741854 |
actcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgt |
14741953 |
T |
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| Q |
119 |
tgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccat |
218 |
Q |
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| T |
14741954 |
tgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccat |
14742053 |
T |
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| Q |
219 |
acaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagca |
318 |
Q |
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| T |
14742054 |
ac-aatattaaatttgaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagca |
14742152 |
T |
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| Q |
319 |
agctttttactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagcattctcccagcctttgcttct |
398 |
Q |
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| T |
14742153 |
agcttattactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagcattctccctgcctttgtttct |
14742232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 50 - 341
Target Start/End: Original strand, 14734910 - 14735200
Alignment:
| Q |
50 |
tgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaaca |
149 |
Q |
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| T |
14734910 |
tgaacatgagaccacaaaaatgaaaataatgggtgattctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatc |
14735009 |
T |
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| Q |
150 |
ttggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaa |
249 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
14735010 |
ttggacaagtagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatac-aatataaaatttaaacacaactctgcaa |
14735108 |
T |
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| Q |
250 |
aataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
341 |
Q |
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| T |
14735109 |
aacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 14998620 - 14998525
Alignment:
| Q |
82 |
gtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
177 |
Q |
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| T |
14998620 |
gtgattttttcacaaacctgcactttgcaattgcttttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaa |
14998525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 327
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
97 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
196 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
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| Q |
197 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
295 |
Q |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
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| Q |
296 |
ttgcataagtggcttctagagcaagcttttta |
327 |
Q |
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| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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