View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_1 (Length: 787)
Name: NF11055_low_1
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 209 - 779
Target Start/End: Original strand, 34022802 - 34023373
Alignment:
| Q |
209 |
taaagttgaataaagattcatttcaatctggtataattttcttgcaaaccaactcattctccgataaccatatgtcctagctcaatcaaatatatccttt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34022802 |
taaagttgaataaagattcatttcaatctggtataattttcttgcaaaccaactcattctccgataaccatatgtcctagctcaatcaaatatattcttt |
34022901 |
T |
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| Q |
309 |
tatttgtttgnnnnnnnnattgatgtattgtttacttatagggatatggtctgactgaaagtggaggagcggtagcaagaatgataggttatgatgaagc |
408 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34022902 |
tatttgtttgttttttt-attgatgtattgtttacttatagggatatggtctgactgaaagtggaggagcggtagcaagaatgataggttatgatgaagc |
34023000 |
T |
|
| Q |
409 |
taagcgccacggttctgtgggtcgactagcagaaaatatggaagccaagatagttgaccctgttactgttgaggcattatctcctggccataaaggggag |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34023001 |
taagcgccacggttctgtgggtcgactagcagaaaatatggaagccaagatagttgaccctgttactgttgaggcattatctcctggttataaaggggag |
34023100 |
T |
|
| Q |
509 |
ctttggttgcgaggaccaacaatcatgaaaggtgactaataaacttctcc--atttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtg |
606 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
34023101 |
ctttggttgcgaggaccaacaatcatgaaaggtgattaataaacttctccatatttatgggaaccattgcatttgcataatgttaggcagtgaaaatgtg |
34023200 |
T |
|
| Q |
607 |
cactaaaaccaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatga |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023201 |
cactaaaaccaaagatttgctatgttcatgaagttgtaaaatggaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatga |
34023300 |
T |
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| Q |
707 |
taatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
779 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
34023301 |
taatattagtggacagattcatgtattcaatgaataagtctatcactttagttcattaattagagttcatctc |
34023373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 327 - 779
Target Start/End: Original strand, 34030173 - 34030625
Alignment:
| Q |
327 |
attgatgtattgtttacttatagggatatggtctgactgaaagtggaggagcggtagcaagaatgataggttatgatgaagctaagcgccacggttctgt |
426 |
Q |
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||||||||| |||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34030173 |
attgatgtactgtt-acttttagggatatggtctgactgaaagtggaggaggggcagcaagaatgataggttttgatgaagctaagcgccacggttctgt |
34030271 |
T |
|
| Q |
427 |
gggtcgactagcagaaaatatggaagccaagatagttgaccctgttactgttgaggcattatctcctggccataaaggggagctttggttgcgaggacca |
526 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34030272 |
gggtcgactagcagaaaatatggaagctaagatagttgaccctgttactggagaggcattatctcctggccagaaaggggagctttggttgcgaggacca |
34030371 |
T |
|
| Q |
527 |
acaatcatgaaaggtgactaataaacttctccatttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcact-aaaaccaaagatttg |
625 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||| |
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| T |
34030372 |
acaatcatgaaaggtgattaataaacctctccatttatgcgaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaactaaagatttg |
34030471 |
T |
|
| Q |
626 |
ctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagatt |
725 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||||||| |
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| T |
34030472 |
ctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaaataggctgacaatgagttaagtaaagataatattagtggacagatt |
34030571 |
T |
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| Q |
726 |
catgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
779 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
34030572 |
catgtattcaatgaatatgtctctcactttagttcattgattggagttcatctc |
34030625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 34022040 - 34022175
Alignment:
| Q |
19 |
acaatttcaaaaaatcacaatggattatttatactttattgtccactaaattgcatcgtaccactcagtcataattcaattgttaaatgctaaaatcatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
34022040 |
acaatttcaaaaaatcacaatggattatttatactttattgtccactaaattgcatcgtaccactgagtcataattcaattgttaaatgctaaagtcgtt |
34022139 |
T |
|
| Q |
119 |
aggttgaatattcagagtttcgtagattagagctta |
154 |
Q |
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|||||||||||||||||| |||||||||||| |||| |
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| T |
34022140 |
aggttgaatattcagagtgtcgtagattagaactta |
34022175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 34022445 - 34022502
Alignment:
| Q |
153 |
taaaatctttcatttatgtgagtttgagtggtatttaccactccgcctgtatataata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
34022445 |
taaaatctttcatttatgtgagtttgagtggtatttaccactcctccggtatataata |
34022502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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