View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_10 (Length: 352)
Name: NF11055_low_10
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 4141264 - 4141450
Alignment:
| Q |
157 |
tcatattctaaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgtcaccaccaatgatgataatcat |
256 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
4141264 |
tcattttctaaagcttaaatatcttattcagattctctctgtatgtccacttcttgaggatttgctcataaaaaatgtcaccaccaatgatgataatgat |
4141363 |
T |
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| Q |
257 |
actcttgatgctcttactaaacaaacagataagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttct |
343 |
Q |
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| T |
4141364 |
actcttgatgctcttactaaacaaagagacaagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttct |
4141450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 4140580 - 4140706
Alignment:
| Q |
19 |
tcattcaatcaataaagaaagaaacttaactatcaatggcaccaacaagaaaaggtacagacagtatcagcgatttaccggatgaaatacttcatcacat |
118 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
4140580 |
tcattcaatcaacaaagaaagaaacttaactatccatggcaccaacaagaaaaggaacagacaggatcagcgatttaccggatgaaatactccatcacat |
4140679 |
T |
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| Q |
119 |
cctctcatatttgccctcctcacaaat |
145 |
Q |
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| T |
4140680 |
cctctcatttttgccctcctcacaaat |
4140706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 166 - 343
Target Start/End: Complemental strand, 3855350 - 3855173
Alignment:
| Q |
166 |
aaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgtcaccaccaatgatgataatcatactcttgat |
265 |
Q |
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| T |
3855350 |
aaagcttaaatatcttattaagattctctctgtatgtccatttctcgaggatttactcataaaaaatgtcagcacccatgatgataatgatactcttgat |
3855251 |
T |
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| Q |
266 |
gctcttactaaacaaacagataagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttct |
343 |
Q |
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| T |
3855250 |
gctcttgctaaacaaacagacgagttattagaacccttccccaatttgctcaaatcccacatttctgactcttcttct |
3855173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 1882018 - 1882095
Alignment:
| Q |
157 |
tcatattctaaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgt |
234 |
Q |
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| T |
1882018 |
tcattttctaaagcttcaatttcttattaagattctctctgtatgtccgcttcttgaggatttactcatcaaaaatgt |
1882095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 41541812 - 41541889
Alignment:
| Q |
157 |
tcatattctaaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgt |
234 |
Q |
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|||| ||| ||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
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| T |
41541812 |
tcattttccaaagcttcaatttcttattaagattctctccgtatgtccgcttcttgaggatttactcatcaaaaatgt |
41541889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 41541943 - 41541991
Alignment:
| Q |
294 |
taaaacccttccccaaattgctcaaagcccacatttccgactcttcttc |
342 |
Q |
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| T |
41541943 |
taaaacccttccccaatttgctcaaagcccacatttctgactcttcttc |
41541991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 44636942 - 44636883
Alignment:
| Q |
75 |
acagacagtatcagcgatttaccggatgaaatacttcatcacatcctctcatatttgccc |
134 |
Q |
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|||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
44636942 |
acagacaggatcagcgatttacccgatgaaataatatatcacatcctctcatatttgccc |
44636883 |
T |
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