View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11055_low_12 (Length: 292)
Name: NF11055_low_12
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 45082681 - 45082944
Alignment:
| Q |
1 |
acgattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtctt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45082681 |
acgattatattttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagaaacaatgtagttgtctt |
45082780 |
T |
|
| Q |
101 |
caatcagaacatttgtagatgaatctgtataaaagaaagagtggtaaaacaagtagttattattttagtcctttttattgaaccttttattcaatatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45082781 |
caatcagaacatttgtagatgaatctgtatgaaagaaagagtgggaaaacaagtagttattattttagtccttgttattgaaccttttattcaatatgaa |
45082880 |
T |
|
| Q |
201 |
tatgaatgccataagttccatagagttggttcatatat--acattacctgggtctatgccatct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45082881 |
tatgaatgccataagttccatagagttggttcatatatacacattacctgggtctatgccatct |
45082944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45067595 - 45067711
Alignment:
| Q |
1 |
acgattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45067595 |
acgattatcttttgtgatggctttccaactttgattccatacccatccaatccacttttaatcgcaatacaatcatcaccagagacaatgtagttgtctt |
45067694 |
T |
|
| Q |
101 |
caatcagaacatttgta |
117 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
45067695 |
caattagaacgtttgta |
45067711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 45075157 - 45075258
Alignment:
| Q |
3 |
gattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttca |
102 |
Q |
| |
|
|||||| | ||| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
45075157 |
gattatttgttgagatggctttccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactatatagttgtcttca |
45075256 |
T |
|
| Q |
103 |
at |
104 |
Q |
| |
|
|| |
|
|
| T |
45075257 |
at |
45075258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 45078387 - 45078488
Alignment:
| Q |
3 |
gattatcttttgtgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttca |
102 |
Q |
| |
|
|||||| | |||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||| |
|
|
| T |
45078387 |
gattatttgttgtgatggcattccaactttaattccatactcatcccatccactttttattgcaatgcaatcatcgccagagacaatgaagttgtcttca |
45078486 |
T |
|
| Q |
103 |
at |
104 |
Q |
| |
|
|| |
|
|
| T |
45078487 |
at |
45078488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 34504944 - 34505057
Alignment:
| Q |
15 |
tgatggcttgccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacattt |
114 |
Q |
| |
|
||||||||| || | ||| |||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
34504944 |
tgatggctttccgaatttaattccatattgatcccatccactttttatcgcaatacaatcatcaccagagacaatgtagttgtcttcgatcctaacgttc |
34505043 |
T |
|
| Q |
115 |
gtagatgaatctgt |
128 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34505044 |
gtagatgaatctgt |
34505057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 29765336 - 29765256
Alignment:
| Q |
24 |
gccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaat |
104 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| || | |||| ||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
29765336 |
gccaaatttgatgccatactcatcccatccactcttcacagcaacacagtcatccccagaaactatgtagcagtcttcaat |
29765256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University