View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_13 (Length: 255)
Name: NF11055_low_13
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45082562 - 45082326
Alignment:
| Q |
1 |
gttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082562 |
gttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacag |
45082463 |
T |
|
| Q |
101 |
gttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082462 |
gttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactat |
45082363 |
T |
|
| Q |
201 |
tgcaggcaaacttgaaggaatttcgaacgaccctttt |
237 |
Q |
| |
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||| |||||| ||||||||||||| |||||||||||| |
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| T |
45082362 |
tgcgggcaaagttgaaggaatttctaacgaccctttt |
45082326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 45078257 - 45078030
Alignment:
| Q |
10 |
aaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacaggttcttatg |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45078257 |
aaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtgttttggatgacaggttcttatg |
45078158 |
T |
|
| Q |
110 |
gagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactattgcaggcaa |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45078157 |
gagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactattgcgggcaa |
45078058 |
T |
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| Q |
210 |
acttgaaggaatttcgaacgaccctttt |
237 |
Q |
| |
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||||||||||||||| |||||||||||| |
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| T |
45078057 |
acttgaaggaatttctaacgaccctttt |
45078030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45075036 - 45074800
Alignment:
| Q |
1 |
gttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacag |
100 |
Q |
| |
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||||| |||||| | ||| |||||||||| || | |||||||||||||||||||||||||||| ||||| | ||| |||||||||| ||||||||||||| |
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| T |
45075036 |
gttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacag |
45074937 |
T |
|
| Q |
101 |
gttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactat |
200 |
Q |
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| T |
45074936 |
ggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaagaatgtgactat |
45074837 |
T |
|
| Q |
201 |
tgcaggcaaacttgaaggaatttcgaacgaccctttt |
237 |
Q |
| |
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||||||||||||||| |||||||| || ||||||||| |
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| T |
45074836 |
tgcaggcaaacttgatggaatttctaatgaccctttt |
45074800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45067476 - 45067241
Alignment:
| Q |
1 |
gttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacag |
100 |
Q |
| |
|
||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
45067476 |
gttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatgacag |
45067377 |
T |
|
| Q |
101 |
gttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactat |
200 |
Q |
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| T |
45067376 |
gggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgctaagaatgtgacaat |
45067277 |
T |
|
| Q |
201 |
tgcaggcaaacttgaaggaatttcgaacgacccttt |
236 |
Q |
| |
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|||||| ||||||| |||||||| || |||||||| |
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| T |
45067276 |
tgcaggacaacttgacggaatttctaatgacccttt |
45067241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34504811 - 34504572
Alignment:
| Q |
1 |
gttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaataca---ttgaaatatgtgttttggatga |
97 |
Q |
| |
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||||| |||||||| |||||||||||||| | | ||||||||||||||||||||||||| || | ||||| ||| |||| ||||||||||||| ||| |
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| T |
34504811 |
gttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatgtgttttggttga |
34504712 |
T |
|
| Q |
98 |
caggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgac |
197 |
Q |
| |
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|||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||| | || ||||||||| | |||||||||||||| |
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| T |
34504711 |
cagggtcttatggagaccaccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgctaagaatgtgac |
34504612 |
T |
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| Q |
198 |
tattgcaggcaaacttgaaggaatttcgaacgaccctttt |
237 |
Q |
| |
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|||| || |||||||||||||||| || || |||||| |
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| T |
34504611 |
cgttgcggggcaacttgaaggaatttctaatgatcctttt |
34504572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 17584513 - 17584404
Alignment:
| Q |
2 |
ttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacagg |
101 |
Q |
| |
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|||| |||||| |||| || |||||||| || | |||||| | || ||||| | ||||||| | ||||| ||| ||||||||||||||||||||||||| |
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| T |
17584513 |
ttagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttggatgacagg |
17584414 |
T |
|
| Q |
102 |
ttcttatgga |
111 |
Q |
| |
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||| |||||| |
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| T |
17584413 |
ttcatatgga |
17584404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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