View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_15 (Length: 226)
Name: NF11055_low_15
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_15 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 42471183 - 42471360
Alignment:
| Q |
39 |
gtatgcttcgttgattttgtgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgata |
138 |
Q |
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| T |
42471183 |
gtatgcttcattgatcttgtgagaggaaaaagctgcatccaatccattttcaaagacagtgccatggaaacaagtaaacccatcgctgatgttctcgata |
42471282 |
T |
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| Q |
139 |
ctttgaacgagactattggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgtctgtg |
216 |
Q |
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| T |
42471283 |
ctttgaacgagactattggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgtctgtg |
42471360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 3352608 - 3352427
Alignment:
| Q |
29 |
ctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaat |
128 |
Q |
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| T |
3352608 |
ctttgaaaaagtaggcttcattagtcttatgagaagcaaaagctgcatcaattccattttcaaagattgtgccacggaaacacataaacccgtcgataat |
3352509 |
T |
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| Q |
129 |
gttctcgatactttgaacgagactattggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
210 |
Q |
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| T |
3352508 |
gttcttgatactttgaaccagacggttggttccataatctatacgagcatacttgtctcctttgaataagtaaacttatttg |
3352427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 42046115 - 42046167
Alignment:
| Q |
158 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
210 |
Q |
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| T |
42046115 |
ttccatagtctatacgagcatattggtctcctttaaataagtaagcttctttg |
42046167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 63205 - 63358
Alignment:
| Q |
58 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
157 |
Q |
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| T |
63205 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
63304 |
T |
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| Q |
158 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
211 |
Q |
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| T |
63305 |
tgccatagtctatacgagcatacttgtctcctctgaacaagtaaacctctttgt |
63358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 37149 - 37302
Alignment:
| Q |
58 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
157 |
Q |
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| T |
37149 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
37248 |
T |
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| Q |
158 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
211 |
Q |
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| T |
37249 |
tgccatagtctatacgagcatacttatctcctctgaacaagtaaacctctttgt |
37302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 14452764 - 14452708
Alignment:
| Q |
154 |
ttggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
210 |
Q |
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| T |
14452764 |
ttggtgccatagtctatacgagcatacttgtctcctttgaataagtgaacttctttg |
14452708 |
T |
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