View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_16 (Length: 222)
Name: NF11055_low_16
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 11549221 - 11549416
Alignment:
| Q |
12 |
cagagataaccataacattta-tattatgcctcctaaaagaaagcatttaatacaaagcacactaatcattagtattgcaatcatcatcattcaaccaag |
110 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11549221 |
cagacataaccataacatttaatattatgcctcctaaaagaaagcatttaatacaaagcacactaatcattagtattgcaatcatcatcattcaaccaag |
11549320 |
T |
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| Q |
111 |
ttaatgggagtgatgaaaggaaagtacttacatgcagccttaaataagaatctcaaatgtagggaacaaaaacagttacaaattttgcagtacaag |
206 |
Q |
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| T |
11549321 |
ttaatgggagtgatgaaaggaaagtacttacatgcagccttaaataagaatctcaaatgtagggaacaaaaacagttacaaattttgcagtacaag |
11549416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 34770705 - 34770758
Alignment:
| Q |
153 |
aataagaatctcaaatgtagggaacaaaaacagttacaaattttgcagtacaag |
206 |
Q |
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| T |
34770705 |
aataagaatctcaaatgtagggaacaaaaacagttacaaattttgcaatacaag |
34770758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 34770570 - 34770634
Alignment:
| Q |
12 |
cagagataaccataacattta-tattatgcctcctaaaagaaagcatttaatacaaagcacacta |
75 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34770570 |
cagacataaccataacatttaatattatgcctcctaaaagaaagcatttcatacaaagcacacta |
34770634 |
T |
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