View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_17 (Length: 220)
Name: NF11055_low_17
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_17 |
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| [»] scaffold0534 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: scaffold0534 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 9426 - 9237
Alignment:
| Q |
18 |
attactagatatgccagatatatggtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9426 |
attactagatatgccagatatatggtaactactaacttcatgaattagacacaactcaaattttaagacacgcattaataagcatacacaataattgtta |
9327 |
T |
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| Q |
118 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9326 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
9237 |
T |
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Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 28050171 - 28049982
Alignment:
| Q |
18 |
attactagatatgccagatatatggtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28050171 |
attactagatatgccagatatatggtaactactaacttcatgaattagacacaactcaaattttaagacacgcattaataagcatacacaataattgtta |
28050072 |
T |
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| Q |
118 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28050071 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
28049982 |
T |
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Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 19851865 - 19851676
Alignment:
| Q |
18 |
attactagatatgccagatatatggtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19851865 |
attactagatatgccagatatatggtaactactaacttcatgaattagactcaactcaaattttaagacacacattaataagcatacacaataattgtta |
19851766 |
T |
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| Q |
118 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19851765 |
gaaagatatgttgtttactcgtctgtgtagtttcctccattaatgcatttattgaactgatctacaaaagcattcctagtttcttcatct |
19851676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 17231449 - 17231260
Alignment:
| Q |
18 |
attactagatatgccagatatatggtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17231449 |
attactagatatgctagatatatggtaactactaacttcttgaattagacacaactcaaattttaagacacacattaataagcatacacaataattgtta |
17231350 |
T |
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| Q |
118 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17231349 |
gaaagatatgttgtttactcgtatgagtagtttcctccaataatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
17231260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 37960617 - 37960437
Alignment:
| Q |
18 |
attactagatatgccagatatatggtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
37960617 |
attactagatatgcttgatatatggtaactactaatttcatgaattagact---------ttttaagacacacattaataagtatacacaataatagtta |
37960527 |
T |
|
| Q |
118 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
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||||||||| ||||||||| | |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37960526 |
gaaagatattttgtttacttctttgagtagttttcttcattaatgcatttattgaactggtctacaaaagcagtcctagtttcttcatct |
37960437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 12634057 - 12634164
Alignment:
| Q |
18 |
attactagatatgccagatatatggtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||| |||||||| |||||||||| ||||| |||||||||| |
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| T |
12634057 |
attactagatatgcccgatatatggtaactactaacttcatgaattagactcaactcaaattctaagacactcattaataagtatacataataattgttc |
12634156 |
T |
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| Q |
118 |
gaaagata |
125 |
Q |
| |
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|||||||| |
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| T |
12634157 |
gaaagata |
12634164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 12634207 - 12634264
Alignment:
| Q |
150 |
tcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||| || ||||||| |||||| |
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| T |
12634207 |
tcctccattgatgcatttattgaactgatctacaaaagcactcttagtttcgtcatct |
12634264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 3577 - 3397
Alignment:
| Q |
42 |
gtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta------------------gaaaga |
123 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
3577 |
gtaactactaacttcatgaattagactcaattcaaattttaaga--cacattaataagcatacacaataattgttagaaagataaatagaatatgaaaga |
3480 |
T |
|
| Q |
124 |
tatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
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|
||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||| |||| |
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| T |
3479 |
tatgttgtttaatcgtctgaacagtttcctccactaatgcatttattgaactgatctac-aaacccttcctagtttctttatct |
3397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 11911883 - 11911703
Alignment:
| Q |
42 |
gtaactactaacttcatgaattagacactattcaaattttaagacacacattaataagcatacacaataattgtta------------------gaaaga |
123 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
11911883 |
gtaactactaacttcatgaattagactcaattcaaattttaaga--cacattaataagcatacacaataattgttagaaagataaatagaatatgaaaga |
11911786 |
T |
|
| Q |
124 |
tatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||| |||| |
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| T |
11911785 |
tatgttgtttaatcgtctgaacagtttcctccactaatgcatttattgaactgatctac-aaacccttcctagtttctttatct |
11911703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 11114 - 11202
Alignment:
| Q |
118 |
gaaagatatgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatct |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||| |
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| T |
11114 |
gaaagatatgttgtttactcgtctgaacagtttcctccattaatgcatttattgaactgatctac-aaacccttcctagtttcttcatct |
11202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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