View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_3 (Length: 439)
Name: NF11055_low_3
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 54293105 - 54292701
Alignment:
| Q |
19 |
ttttattcgtggaaattatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacgaaaaatgaatggactgagaaggaaaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54293105 |
ttttattcgtggaaattatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacgaaaaatgaatggactgagaaggaaaca |
54293006 |
T |
|
| Q |
119 |
ctgaatcttcttgaagctattacgaatttcggtgatgattggaagagggttgctcatcaagttgttggtaggaccgacaaggaatgcgttgctcgttttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54293005 |
ctgaatcttcttgaagctattacgaatttcggtgatgattggaagagggttgctcatcaagttgttggtaggaccgacaaggaatgcgttgctcgttttt |
54292906 |
T |
|
| Q |
219 |
tagagcttccttttggtgatcagtttctgcattatccacactccgagtctgttcctcgcattgatgatggttctgatcagttgaagcctcccgttgctgc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54292905 |
tagagcttccttttggtgatcagtttctgcattatccacactccgagtctgctccttgcattgatgatggttctgatcagttgaagcctcccgttgctgc |
54292806 |
T |
|
| Q |
319 |
tgaatgtgaatccgaaactgttgcgtcggataaatctagtaagagaatgtgtctcacacctcttgcggatgctagcaatcctatcatggctcaggttctt |
418 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54292805 |
tgaatgtgaatccgaaactgttccgtcggataaatctagtaagagaatgtgtctcacacctcttgcggatgctagcaatcctatcatggctcaggttctt |
54292706 |
T |
|
| Q |
419 |
tcttg |
423 |
Q |
| |
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||||| |
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|
| T |
54292705 |
tcttg |
54292701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 19123529 - 19123753
Alignment:
| Q |
19 |
ttttattcgtggaaattatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacgaaaaatgaatggactgagaaggaaaca |
118 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |
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| T |
19123529 |
ttttatttgtggaaactatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacaaaaaaagaatggactgaggaggaaaca |
19123628 |
T |
|
| Q |
119 |
ctgaatcttcttgaagctattacgaatttcggtgatgattggaagagggttgctcatcaagttgttggtaggaccgacaaggaatgcgttgctcgttttt |
218 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19123629 |
ctgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtaggaccgacaaggaatgtgttgctcgttttc |
19123728 |
T |
|
| Q |
219 |
tagagcttccttttggtgatcagtt |
243 |
Q |
| |
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|||||||||||||||| |||||||| |
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|
| T |
19123729 |
tagagcttccttttggcgatcagtt |
19123753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 19123746 - 19123791
Alignment:
| Q |
293 |
gatcagttgaagcctcccgttgctgctgaatgtgaatccgaaactg |
338 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
19123746 |
gatcagttaaagcctcccgttgatgctgaatgtgaatccgaaactg |
19123791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 36753199 - 36753419
Alignment:
| Q |
23 |
attcgtggaaattatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacgaaaaatgaatggactgagaaggaaacactga |
122 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
36753199 |
attcgtgggaactatcgaattggtatgagtaatacaaaatttaagagagtggagataagtgaggagacaaaaaatgaatggactgaggaggaaacactga |
36753298 |
T |
|
| Q |
123 |
atcttcttgaagctattacgaatttcggtgatgattggaagagggttgctcatcaagttgttggtaggaccgacaaggaatgcgttgctcgttttttaga |
222 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
36753299 |
atcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtaggaccgacaaggaatgtgttgctcgttttctaga |
36753398 |
T |
|
| Q |
223 |
gcttccttttggtgatcagtt |
243 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
36753399 |
gcttccttttggcgatcagtt |
36753419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 293 - 413
Target Start/End: Original strand, 36753412 - 36753532
Alignment:
| Q |
293 |
gatcagttgaagcctcccgttgctgctgaatgtgaatccgaaactgttgcgtcggataaatctagtaagagaatgtgtctcacacctcttgcggatgcta |
392 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36753412 |
gatcagttgaagcctcccgttgatgctgaatgggaatccgaaattgttgggtcgggtaaatctagtaagagaatgtgtctcacacctcttaatgatgcta |
36753511 |
T |
|
| Q |
393 |
gcaatcctatcatggctcagg |
413 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
36753512 |
tcaatcctatcatggctcagg |
36753532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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