View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_4 (Length: 438)
Name: NF11055_low_4
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 21 - 426
Target Start/End: Original strand, 10557991 - 10558397
Alignment:
| Q |
21 |
gtccccctctgatcttcttccatcaacatcgactcatacttacttctcagagattaaagattcagttgcttcaatttctccaataaatctcttgcctctt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10557991 |
gtccccctctgatcttcttccatcaacatcgactcatacttacttatgagagattaaatattcagttgcttcaatttctccaataaatctcttgcctctt |
10558090 |
T |
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| Q |
121 |
ttcaaagtgatgagtatctacattcagctgaatatagaactgtcttgcaatctttcttttttgaacctatggattgttctttgcattgaatttgctacca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558091 |
ttcaaagtgatgagtatctacattcagctgaatatagaactgtcttgcaatctttcttttttgaacctatggattgttctttgcattgaatttgctacca |
10558190 |
T |
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| Q |
221 |
actcttcattgccatcctgaacaacctcgaccacttctcgagctccaaa-agagacttaaccagtgcgctccaaccattaataaatatatttatttgtat |
319 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558191 |
actcttcatagccatcctgaacaacctcgagcacttctcgagctccaaatagagacttaaccagtgcgctccaaccattaataaatatatttatttgtat |
10558290 |
T |
|
| Q |
320 |
gt-tttatatacctcaatacttttttgtaagagtttgatgtttaaattgtggattgcttcttggtttgtatgagtttgatgtttagatcgtggattgctt |
418 |
Q |
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|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558291 |
gtaattatatacctcaatac-tttttgtatgagtttgatgtttaaattgtggattgcttcttggtttgtatgagtttgatgtttagatcgtggattgctt |
10558389 |
T |
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| Q |
419 |
tttggttc |
426 |
Q |
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|||||||| |
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| T |
10558390 |
tttggttc |
10558397 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 26628027 - 26628090
Alignment:
| Q |
30 |
tgatcttcttccatcaacatcgactcatacttacttctcagagattaaagattcagttgcttca |
93 |
Q |
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||||| ||||||||||||||| |||||||||| |||||||| || | ||| |||| |||||||| |
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| T |
26628027 |
tgatcatcttccatcaacatcaactcatacttccttctcagtgactgaagcttcacttgcttca |
26628090 |
T |
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