View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_6 (Length: 409)
Name: NF11055_low_6
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 29570921 - 29570526
Alignment:
| Q |
1 |
gtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29570921 |
gtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggcc |
29570822 |
T |
|
| Q |
101 |
ttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtcaaagtattgaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29570821 |
ttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtcaaagtattgaaaac |
29570722 |
T |
|
| Q |
201 |
tttatactaaccacttcaattaaaaatgcaaac--nnnnnnnnactttaccatttcaccaaaataatgaagttaaagaaacatatacaagctcaaatatt |
298 |
Q |
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| T |
29570721 |
tttatactaaccacttcaattaaaaatgcaaacttttttttttactttaccatttcaccaaaataatgaagttaaagaaacatatacaagctcaaacatt |
29570622 |
T |
|
| Q |
299 |
tcatacttgctcataatcaaaatgcataattaaaaatatttcacatcttaaatgcttgatttcattgtctttgaaaaatggaaagaaattgaaaac |
394 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29570621 |
tcatacttgctcataatcaaaatgcataattaaaactatttcacatcttaaatgcttgatttcattgtctttgaaaaatggaaagaaattgaaaac |
29570526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 44674082 - 44674026
Alignment:
| Q |
100 |
cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgca |
156 |
Q |
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| T |
44674082 |
cttaggtaatttatccatctcaatctgcaactcttgccacatcttagcaagcctgca |
44674026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 33378814 - 33378670
Alignment:
| Q |
14 |
gaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggccttaggtaatttgt |
113 |
Q |
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|||| ||||| || |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||| | ||||||||| |
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| T |
33378814 |
gaaataacctgttcccaagttgagcatgaagatcaatcaccattttctcttcatattcagataaaagtcctctttttaaatctggcctcaagtaatttgt |
33378715 |
T |
|
| Q |
114 |
ccatctcaatctgcaactttttccacaccttaacaaccctgcatg |
158 |
Q |
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|||||| | ||| |||||||||||||||||||| | ||||||||| |
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| T |
33378714 |
ccatctaagtctacaactttttccacaccttaatagccctgcatg |
33378670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 3616471 - 3616412
Alignment:
| Q |
95 |
ctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctg |
154 |
Q |
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|||||||||| |||||||||||||| | ||||||||| || | |||||||||||| |||| |
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| T |
3616471 |
ctggccttagataatttgtccatctaagtctgcaactcttactacaccttaacaaacctg |
3616412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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