View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11055_low_7 (Length: 406)
Name: NF11055_low_7
Description: NF11055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11055_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 395
Target Start/End: Original strand, 34582291 - 34582665
Alignment:
| Q |
21 |
tattacctgtgaaaagaccaatgcatatatagggagtaaannnnnnnnnnnnnnnngaataagagaataacattgttttaggcttcctttgtttccggcc |
120 |
Q |
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| T |
34582291 |
tattacctgtgaaaagaccaatgcatatatagggagtaaattttattttattttttgaataagagaataacattgttttaggcttcctttgcttccggcc |
34582390 |
T |
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| Q |
121 |
tcttctataagctgaattaacattatcaaattaaattaccttagatgtaaagtaataactaagaaacaacattagccatttataattagaccaagcacaa |
220 |
Q |
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| T |
34582391 |
tcttctataagctgaattaacattatcaaattaaattaccttagatgtaaagtaataactaagaaacaacattagccatttataattagaccaagcacaa |
34582490 |
T |
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| Q |
221 |
acaaactaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataaactgcaatctagtgatttgatttcattatttttgt |
320 |
Q |
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| T |
34582491 |
acaaaccaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataaactgcaatctagtgatttgatttcattatttttgt |
34582590 |
T |
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| Q |
321 |
ttttaatcttatgagttttacaggaatagtgctgaagccagaaatttcggaactgattgttctgttttatccttt |
395 |
Q |
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| T |
34582591 |
ttttaatcttatgagttttacaggaatagtgctgaagccagaaatttcggaactgattgttctgttttgtccttt |
34582665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 38491944 - 38492017
Alignment:
| Q |
212 |
caagcacaaacaaactaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataa |
285 |
Q |
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| T |
38491944 |
caagcacaaacaaattaatgatcagcttcacaaaaagattgataaccaagaaaccaatcctgcattattaataa |
38492017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 30513736 - 30513783
Alignment:
| Q |
119 |
cctcttctataagctgaattaacattatcaaattaaattaccttagat |
166 |
Q |
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| T |
30513736 |
cctcttctatgagctgaataaacattgtcaaattaaatcaccttagat |
30513783 |
T |
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