View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11056_high_3 (Length: 266)

Name: NF11056_high_3
Description: NF11056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11056_high_3
NF11056_high_3
[»] chr5 (10 HSPs)
chr5 (66-189)||(39912187-39912310)
chr5 (67-189)||(38967894-38968016)
chr5 (185-266)||(39912348-39912429)
chr5 (66-189)||(39865607-39865732)
chr5 (66-186)||(37467035-37467156)
chr5 (10-70)||(39912028-39912087)
chr5 (66-169)||(39848530-39848633)
chr5 (186-264)||(39899295-39899378)
chr5 (66-157)||(39735112-39735200)
chr5 (6-70)||(39858122-39858185)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 39912187 - 39912310
Alignment:
Q  66 caaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcacatattagcaatcagacagaaaaatcaaacttacaaaaat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39912187 caaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcacatattagcaatcagacagaaaaatcaaacttacaaaaat 39912286  T
Q  166 aacacacctgttgaataatcatca 189  Q
    |||||| |||||||||||||||||    
T  39912287 aacacatctgttgaataatcatca 39912310  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 38968016 - 38967894
Alignment:
Q  67 aaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcacatattagcaatcagacagaaaaatcaaacttacaaaaata 166  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||    
T  38968016 aaaagcgctggaattgagctggtatgccaaactctttagcaacctcttcctacataacacatattaacaatcaaacagagaaatcaaacttacaaaaata 38967917  T
Q  167 acacacctgttgaataatcatca 189  Q
    ||||  | |||||||||||||||    
T  38967916 acacctcggttgaataatcatca 38967894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 39912348 - 39912429
Alignment:
Q  185 catcaaaagcataaaaaccacagattattcaaatgacgacttttttctccttccaactaaagcatcatgttttaatatttta 266  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39912348 catcaaaagcataaaaaccacagattattcatatgacgacttttttctccttccaactaaagcatcatgttttaatatttta 39912429  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 39865607 - 39865732
Alignment:
Q  66 caaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcac--atattagcaatcagacagaaaaatcaaacttacaaaa 163  Q
    ||||||||||||||| |||| |||||||  |||||||| ||||||||||||||||||||||  ||||||||||| | ||||||||||||||| |||||||    
T  39865607 caaaagcgctggaattgagctggtatgcaaaactctttagcaacctcttcctacatatcacatatattagcaataaaacagaaaaatcaaacatacaaaa 39865706  T
Q  164 ataacacacctgttgaataatcatca 189  Q
    |||| ||| | |||||| ||||||||    
T  39865707 ataatacatccgttgaaaaatcatca 39865732  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 37467035 - 37467156
Alignment:
Q  66 caaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcacatattagcaatcagacagaaaaatcaaact-tacaaaaa 164  Q
    ||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||    |||||    
T  37467035 caaaagcgctggaattgaacaggtatgccgaactctttagcaacctcttcctacatatcacagattagcaatcaaacagaaataccaaactcggaaaaaa 37467134  T
Q  165 taacacacctgttgaataatca 186  Q
    ||||||| || |||||||||||    
T  37467135 taacacagctattgaataatca 37467156  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 39912028 - 39912087
Alignment:
Q  10 atgaaaaggtcacagaataagaagcttgaagggggtaatatgagcaaaataatattcaaaa 70  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39912028 atgaaaaggtcacagaataagaagcttgaagggggt-atatgagcaaaataatattcaaaa 39912087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 39848530 - 39848633
Alignment:
Q  66 caaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcacatattagcaatcagacagaaaaatcaaacttacaaaaat 165  Q
    ||||||||||||||| |||| |||||||| |||||||| ||||| | |||||||||||||||||  | |||||| ||  ||||||| |||||||||||||    
T  39848530 caaaagcgctggaattgagctggtatgccaaactctttagcaacattttcctacatatcacataaaatcaatcaaacgtaaaaatccaacttacaaaaat 39848629  T
Q  166 aaca 169  Q
    ||||    
T  39848630 aaca 39848633  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 39899295 - 39899378
Alignment:
Q  186 atcaaaagcataaaaaccacagattattcaaatgacga----cttttttctccttccaactaaagcatcatg-ttttaatattt 264  Q
    ||||||||||||||||||||| |||||||| |||||||     |||||||| ||| |||||||||||||||| |||||||||||    
T  39899295 atcaaaagcataaaaaccacatattattcatatgacgaatactttttttcttctttcaactaaagcatcatgcttttaatattt 39899378  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 39735200 - 39735112
Alignment:
Q  66 caaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctacatatcacatattagcaatcagacagaaaaatcaaactt 157  Q
    |||||||||||||||| |||||||||| | |||||||| |||| |  || |||||||||||  |||| |||||| |||| ||||||||||||    
T  39735200 caaaagcgctggaatccagccggtatgtcaaactctttagcaagcaatttctacatatcac--attaacaatcaaacag-aaaatcaaactt 39735112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 39858122 - 39858185
Alignment:
Q  6 agagatgaaaaggtcacagaataagaagcttgaagggggtaatatgagcaaaataatattcaaaa 70  Q
    ||||||||||| |||| | |||| |||||||||||||| | |||||||||||| |||||| ||||    
T  39858122 agagatgaaaaagtcataaaatatgaagcttgaaggggat-atatgagcaaaacaatattgaaaa 39858185  T

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