View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11056_low_1 (Length: 567)

Name: NF11056_low_1
Description: NF11056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11056_low_1
NF11056_low_1
[»] chr5 (6 HSPs)
chr5 (78-567)||(685806-686288)
chr5 (92-183)||(5506917-5507008)
chr5 (134-241)||(6706281-6706388)
chr5 (91-140)||(4192000-4192049)
chr5 (94-199)||(8367025-8367129)
chr5 (149-241)||(14613557-14613649)
[»] chr4 (10 HSPs)
chr4 (99-243)||(53860792-53860935)
chr4 (94-231)||(4873071-4873207)
chr4 (164-243)||(21538913-21538992)
chr4 (94-179)||(48524006-48524091)
chr4 (92-200)||(24680787-24680895)
chr4 (107-180)||(32430569-32430642)
chr4 (99-159)||(34290843-34290903)
chr4 (92-159)||(3703577-3703646)
chr4 (188-241)||(5979792-5979845)
chr4 (207-239)||(2605470-2605502)
[»] chr7 (2 HSPs)
chr7 (135-241)||(37701263-37701369)
chr7 (135-199)||(31736991-31737055)
[»] chr1 (8 HSPs)
chr1 (137-234)||(39065330-39065426)
chr1 (81-158)||(8258891-8258969)
chr1 (94-241)||(30018587-30018734)
chr1 (92-199)||(11985445-11985552)
chr1 (91-241)||(17322083-17322233)
chr1 (99-200)||(7172445-7172546)
chr1 (127-179)||(3510841-3510893)
chr1 (166-198)||(32711807-32711839)
[»] chr3 (1 HSPs)
chr3 (95-234)||(32609388-32609528)
[»] chr2 (5 HSPs)
chr2 (91-241)||(41324894-41325044)
chr2 (91-140)||(9745346-9745395)
chr2 (143-200)||(12232341-12232398)
chr2 (166-239)||(37096669-37096742)
chr2 (91-139)||(13793672-13793720)
[»] chr6 (4 HSPs)
chr6 (92-230)||(18142355-18142493)
chr6 (97-139)||(30351443-30351485)
chr6 (163-199)||(16185327-16185363)
chr6 (127-159)||(22476138-22476170)
[»] scaffold0110 (2 HSPs)
scaffold0110 (94-139)||(11436-11481)
scaffold0110 (94-139)||(19173-19218)
[»] chr8 (2 HSPs)
chr8 (102-159)||(13076420-13076477)
chr8 (148-241)||(25939305-25939398)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 78 - 567
Target Start/End: Original strand, 685806 - 686288
Alignment:
Q  78 ttgatcgacacttctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttat 177  Q
    ||||| ||||||||| |||| ||||| ||||||||||||||| || || |||||||||||||||||||||||  |||||||||| ||||||| || ||||    
T  685806 ttgattgacacttctatttttacatcaattgtttcctataaatatatggaaatgaccaaaaaattcagtggtgattaactacaattgattttctaattat 685905  T
Q  178 aagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaacattaataaatatgagaaaagcaattgtcaaattgctt 277  Q
    ||||||||| |||||||||||||||  |||||||||      |||||| |||||||| ||||||   ||| |||||||||||||||||||||||||| ||    
T  685906 aagccaacggtagttaactaccattagagtgttttt------ttccatatgtttctatgaaaca---atagatatgagaaaagcaattgtcaaattgttt 685996  T
Q  278 tctagaaattgggtatgataagtcaaactcaatgaaagggttgggccctacacagacaaaatccataaattcttagcaagcccaatgtccaatatgctac 377  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  685997 tctagaaattgggtatgatatgtcgaactcaatgaaatggttgggccctacacagacaaagtccataaattcttagcaagcccaatgtccaatatgctac 686096  T
Q  378 aaggcacatacactttgacattagacgtgtttcagtgtcagacacgtgttaaacaagtgttctaaaattaac-nnnnnnnnctttgcttcaacacactct 476  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||         ||||||||| ||| |||||    
T  686097 gaggcacatacactttgacattagacgtgtttcagtgtcagacacgtgttaaacaaatgttttaaaattaactttttttttctttgcttcgacagactct 686196  T
Q  477 tacactcctttgataattgtcattcgcttaccaatg-nnnnnnnagggaattcgcttaccaatgttagttaactgtcattgcaaatttttgt 567  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  686197 tacactcctttgataattgtcattcgcttaccaatgttttttttagggaattcgcttaccaatgttagttaactgtcattgcaaatttttgt 686288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 5507008 - 5506917
Alignment:
Q  92 tgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagcca 183  Q
    ||||||||||||||||||||  || ||||| ||||||||||  |||||||||||||||| ||||||||  | |||||| |||||||||||||    
T  5507008 tgttttcacatccattgttttttagaaacacgtgaaaatgattaaaaaattcagtggtaattaactaccgccgattttctagttataagcca 5506917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 6706388 - 6706281
Alignment:
Q  134 caaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttct 233  Q
    ||||||| |||  |||||||||||||  |  |||||||||||||||| ||||| ||||||||||||  |||| |||||||| | |||| ||||||||| |    
T  6706388 caaaaaactcaacggtagttaactactgccaattttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttat 6706289  T
Q  234 acgaaaca 241  Q
    | ||||||    
T  6706288 aagaaaca 6706281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 4192049 - 4192000
Alignment:
Q  91 ctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaa 140  Q
    |||||| |||||||||||||||||| |||||  |||||||||||||||||    
T  4192049 ctgtttacacatccattgtttcctacaaacacatgaaaatgaccaaaaaa 4192000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 8367025 - 8367129
Alignment:
Q  94 ttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagtta 193  Q
    |||| ||||||||||||||||| ||||   |  ||||||||||||| | ||| ||||||||||||| || |||||||||||||| | |||  | ||||||    
T  8367025 ttttgacatccattgtttcctagaaacccatagaaatgaccaaaaact-cagcggtagttaactaccaccgattttttagttatcaaccagtggtagtta 8367123  T
Q  194 actacc 199  Q
    ||||||    
T  8367124 actacc 8367129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 14613649 - 14613557
Alignment:
Q  149 tagttaactacaactgattttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaaca 241  Q
    |||||||||||  | |||||| ||||||||||||| |  | | |||||||| ||| |||||||||| | |||| |||||||||||| ||||||    
T  14613649 tagttaactaccgccgattttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaaca 14613557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 53860935 - 53860792
Alignment:
Q  99 acatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagttaactac 198  Q
    ||||||||||||||||| |||||  || |||||||||||||||||||||||||||||| ||  |||||||| |||||||||| || || | |||||||||    
T  53860935 acatccattgtttcctagaaacacatggaaatgaccaaaaaattcagtggtagttaaccaccgctgattttctagttataagtcagcggtggttaactac 53860836  T
Q  199 cattgaagtgtttttgatcatttccatgtgtttctacgaaacatt 243  Q
    | ||| | | |||||| ||||||||||||||||||| ||||||||    
T  53860835 cgttgga-tttttttggtcatttccatgtgtttctaggaaacatt 53860792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 4873207 - 4873071
Alignment:
Q  94 ttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagtta 193  Q
    |||| ||||||||| ||||||| |||||  |||||||||| |||||   ||||||||||||||||| |    |||| |||||||||| || || ||||||    
T  4873207 ttttgacatccattctttcctaaaaacacatgaaaatgactaaaaacc-cagtggtagttaactaccatcagttttctagttataagtcagcggtagtta 4873109  T
Q  194 actaccattgaagtgtttttgatcatttccatgtgttt 231  Q
    ||||||  ||||||||||||||||||||||||||||||    
T  4873108 actaccgctgaagtgtttttgatcatttccatgtgttt 4873071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 21538913 - 21538992
Alignment:
Q  164 gattttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaacatt 243  Q
    |||||| || |||||||||| || || |||||||||||||  ||||||||| |||||||| |||||||||| ||||||||    
T  21538913 gattttctaattataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaacatt 21538992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 48524006 - 48524091
Alignment:
Q  94 ttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataa 179  Q
    |||||||||| | |||||| || |||||| ||||||||||||||||| |||  |||||||||||||    ||||||||||||||||    
T  48524006 ttttcacatcaagtgtttcatagaaacatatgaaaatgaccaaaaaactcaacggtagttaactactgtcgattttttagttataa 48524091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 24680895 - 24680787
Alignment:
Q  92 tgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagt 191  Q
    |||||||||||| |||||||| || |||||  ||||||||| | |||||||||| |||| ||||||||    | || | ||||||||||||| || ||||    
T  24680895 tgttttcacatctattgtttcttaaaaacacatgaaaatgatcgaaaaattcagcggtaattaactaccgtcggttctctagttataagccagcggtagt 24680796  T
Q  192 taactacca 200  Q
    |||||||||    
T  24680795 taactacca 24680787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 32430642 - 32430569
Alignment:
Q  107 tgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataag 180  Q
    |||||||||||||||  |||||| ||| ||||| ||||| |||||||||||||  | |||||| ||||||||||    
T  32430642 tgtttcctataaacacatgaaaaagactaaaaagttcagcggtagttaactaccgccgattttctagttataag 32430569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34290903 - 34290843
Alignment:
Q  99 acatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactac 159  Q
    ||||| |||||||| || |||||| || |||||||| ||||||| ||||||||||||||||    
T  34290903 acatctattgtttcttaaaaacatatggaaatgacccaaaaattaagtggtagttaactac 34290843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 3703577 - 3703646
Alignment:
Q  92 tgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaat--tcagtggtagttaactac 159  Q
    |||||| |||||||||||||  || |||||  ||||||||||||||||||  |||| |||||||||||||    
T  3703577 tgttttaacatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactac 3703646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 5979792 - 5979845
Alignment:
Q  188 tagttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaaca 241  Q
    |||||||||||| |||  ||||||||| |||||||||| |||||||| ||||||    
T  5979792 tagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaaca 5979845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 2605470 - 2605502
Alignment:
Q  207 tgtttttgatcatttccatgtgtttctacgaaa 239  Q
    |||||||||||||||||||||||||||| ||||    
T  2605470 tgtttttgatcatttccatgtgtttctaggaaa 2605502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 37701369 - 37701263
Alignment:
Q  135 aaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttcta 234  Q
    ||||||||||  |||||||||||||    ||||||||||||||||| || || ||||||||||| |  ||||||||||||||||||||||| ||||||||    
T  37701369 aaaaaattcaacggtagttaactaccgtcgattttttagttataagtcagcggtagttaactacaaccgaagtgtttttgatcatttccatatgtttcta 37701270  T
Q  235 cgaaaca 241  Q
     ||||||    
T  37701269 agaaaca 37701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 31737055 - 31736991
Alignment:
Q  135 aaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagttaactacc 199  Q
    ||||||| |||  ||| |||||||| || |||||||||||||||||||| |||||||||||||||    
T  31737055 aaaaaatccagcagtaattaactaccaccgattttttagttataagccagcgatagttaactacc 31736991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 39065426 - 39065330
Alignment:
Q  137 aaaattcagtggtagttaactacaactgattttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttcta 234  Q
    ||||||||| ||||||||||||  || ||||||||||||||||| || || |||||||||| || |||||||||||| ||||||||||| ||||||||    
T  39065426 aaaattcagcggtagttaactatcaccgattttttagttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttcta 39065330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 8258891 - 8258969
Alignment:
Q  81 atcgacactt-ctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaacta 158  Q
    |||||||||| | ||||||||||||||||||||||| |||||  |||||||||| |||||| |||| ||||||||||||    
T  8258891 atcgacacttgcagttttcacatccattgtttcctaaaaacacatgaaaatgactaaaaaactcagcggtagttaacta 8258969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 30018734 - 30018587
Alignment:
Q  94 ttttcacatccattgtttcctataaa-catgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagtt 192  Q
    |||| ||||||||||||||||| ||| ||  || |||||||||||||   ||  |||||||||||||  | |||||| |||||||||||   ||||||||    
T  30018734 ttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaacc-caacggtagttaactaccgccgattttctagttataagcacgcgatagtt 30018636  T
Q  193 aactaccattgaagtgtttttgatcatttccatgtgtttctacgaaaca 241  Q
    |||||||  |  ||||||||||||||||| |||| | ||||| ||||||    
T  30018635 aactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaaca 30018587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 11985445 - 11985552
Alignment:
Q  92 tgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagt 191  Q
    |||||||||||| ||||||| ||| |||||  ||||||||||||||||| |||  ||||||||| |||    |  ||| |||||||||| || |||||||    
T  11985445 tgttttcacatctattgttttctagaaacacatgaaaatgaccaaaaaactcatcggtagttaattactgtcggatttctagttataagtcagcgatagt 11985544  T
Q  192 taactacc 199  Q
    ||||||||    
T  11985545 taactacc 11985552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 17322083 - 17322233
Alignment:
Q  91 ctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatag 190  Q
    ||||||| ||||  |||||||| || |||||  || |||||| ||||||| ||||||||||||||||||  ||| |||| |  ||  |||||||| ||||    
T  17322083 ctgttttgacatatattgtttcttagaaacaaatggaaatgatcaaaaaactcagtggtagttaactaccgctggttttctgctttaaagccaacaatag 17322182  T
Q  191 ttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaaca 241  Q
    |||| ||||  ||| || |||||  | ||||| ||||||||||| ||||||    
T  17322183 ttaattaccgctgatgtattttttgttatttctatgtgtttctaagaaaca 17322233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 7172546 - 7172445
Alignment:
Q  99 acatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagttaactac 198  Q
    |||||||||||||| || | ||||  | |||||||||||||| |||| ||||||||||||| || |||||| || ||  ||| || || |||||||||||    
T  7172546 acatccattgtttcttagagacattagtaaatgaccaaaaaactcagcggtagttaactactaccgattttctattttgaagtcagcgctagttaactac 7172447  T
Q  199 ca 200  Q
    ||    
T  7172446 ca 7172445  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 3510841 - 3510893
Alignment:
Q  127 aaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataa 179  Q
    ||||||||||||||| ||| ||||||||||| | || | ||||||||||||||    
T  3510841 aaatgaccaaaaaatccagcggtagttaactgctaccggttttttagttataa 3510893  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 32711807 - 32711839
Alignment:
Q  166 ttttttagttataagccaacgatagttaactac 198  Q
    ||||||||||||||| |||||||||||||||||    
T  32711807 ttttttagttataagtcaacgatagttaactac 32711839  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 234
Target Start/End: Complemental strand, 32609528 - 32609388
Alignment:
Q  95 tttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttt-tagttataagccaacgatagtta 193  Q
    ||||||| |||||||||| |||||| || || ||||||| |||||| | |  |||||||||||| |   ||||||| |||||||||| || || || |||    
T  32609528 tttcacacccattgtttcttataaaaatatggaaatgactaaaaaacttaacggtagttaactatagtcgatttttctagttataagtcagcggtaatta 32609429  T
Q  194 actaccattgaagtgtttttgatcatttccatgtgtttcta 234  Q
    | || || ||||||||||||||| |||||||||||||||||    
T  32609428 attatcactgaagtgtttttgattatttccatgtgtttcta 32609388  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 41324894 - 41325044
Alignment:
Q  91 ctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatag 190  Q
    ||||||| |||||||||||||| || |||||  |  |||| |||||||| | |||  ||||||||||||  | |||||| |  ||  ||| ||  |||||    
T  41324894 ctgttttgacatccattgtttcttagaaacacattgaaattaccaaaaagtccagcagtagttaactaccgccgattttctgctttgaagtcagtgatag 41324993  T
Q  191 ttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaaca 241  Q
    ||||||||||||||| |||||||| | ||||||||||||||||| ||||||    
T  41324994 ttaactaccattgaaatgtttttggttatttccatgtgtttctaagaaaca 41325044  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 9745346 - 9745395
Alignment:
Q  91 ctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaa 140  Q
    ||||||| |||||||||||||| || ||||||||| ||||||||||||||    
T  9745346 ctgttttgacatccattgtttcttagaaacatgtggaaatgaccaaaaaa 9745395  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 12232398 - 12232341
Alignment:
Q  143 cagtggtagttaactacaactgattttttagttataagccaacgatagttaactacca 200  Q
    |||||||||||||||||    ||||||||||||||||| || ||||||||||||||||    
T  12232398 cagtggtagttaactaccgtcgattttttagttataagtcagcgatagttaactacca 12232341  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 37096669 - 37096742
Alignment:
Q  166 ttttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaa 239  Q
    ||||||||||||||| || || |||||||||||| ||||  |||||||| |||| ||||| |||||||| ||||    
T  37096669 ttttttagttataagtcagcggtagttaactaccgttgagatgtttttgctcatctccatatgtttctaggaaa 37096742  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 13793672 - 13793720
Alignment:
Q  91 ctgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaa 139  Q
    ||||||| |||||||||||||| || |||||| ||| ||||||||||||    
T  13793672 ctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaa 13793720  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 230
Target Start/End: Original strand, 18142355 - 18142493
Alignment:
Q  92 tgttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactacaactgattttttagttataagccaacgatagt 191  Q
    |||||||||| ||| ||||| |||  ||||  ||||||||||||||||||  || |||||||||||||   || |||| |||| |||| | | || ||||    
T  18142355 tgttttcacaaccagtgttttctaataacacatgaaaatgaccaaaaaatcaagcggtagttaactaccgttggttttctagtcataaacaagcgctagt 18142454  T
Q  192 taactaccattgaagtgtttttgatcatttccatgtgtt 230  Q
    ||||||||  ||| ||||||||  |||||| ||||||||    
T  18142455 taactaccgctgaggtgtttttagtcattttcatgtgtt 18142493  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 30351443 - 30351485
Alignment:
Q  97 tcacatccattgtttcctataaacatgtgaaaatgaccaaaaa 139  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||    
T  30351443 tcacatctattgtttcctagaaacatatgaaaatgaccaaaaa 30351485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 16185327 - 16185363
Alignment:
Q  163 tgattttttagttataagccaacgatagttaactacc 199  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  16185327 tgattttctagttataagccaacggtagttaactacc 16185363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 22476170 - 22476138
Alignment:
Q  127 aaatgaccaaaaaattcagtggtagttaactac 159  Q
    ||||||||||||||||||| |||||||||||||    
T  22476170 aaatgaccaaaaaattcagcggtagttaactac 22476138  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 11436 - 11481
Alignment:
Q  94 ttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaa 139  Q
    |||||||||  ||||||||||| |||||| ||||||||||||||||    
T  11436 ttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaa 11481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 19173 - 19218
Alignment:
Q  94 ttttcacatccattgtttcctataaacatgtgaaaatgaccaaaaa 139  Q
    |||||||||  ||||||||||| |||||| ||||||||||||||||    
T  19173 ttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaa 19218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 13076477 - 13076420
Alignment:
Q  102 tccattgtttcctataaacatgtgaaaatgaccaaaaaattcagtggtagttaactac 159  Q
    |||| ||||||||| |||||  |||||||||| |||||| || |||||||||||||||    
T  13076477 tccaatgtttcctaaaaacacatgaaaatgactaaaaaactccgtggtagttaactac 13076420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 25939398 - 25939305
Alignment:
Q  148 gtagttaactacaactgattttttagttataagccaacgatagttaactaccattgaagtgtttttgatcatttccatgtgtttctacgaaaca 241  Q
    |||||||||||| ||   |||| ||||||||||||| || ||||||||||||  |   ||||||||| || ||||||| |||||||| ||||||    
T  25939398 gtagttaactaccaccagttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaaca 25939305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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