View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11056_low_6 (Length: 244)
Name: NF11056_low_6
Description: NF11056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11056_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39912595 - 39912821
Alignment:
| Q |
1 |
attttcctgttgtaaaagtgtaattgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctaca |
100 |
Q |
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| T |
39912595 |
attttcccgttgtaatagtgtaattgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacacagaaactcctcactttcccatggtctaca |
39912694 |
T |
|
| Q |
101 |
agattaaaatatatatcctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattatgtgttatcagtataaataaataaaaataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
39912695 |
agattaaaatatatatcctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattatgtgttatcagtatatataaatataaataca |
39912794 |
T |
|
| Q |
201 |
atctgattgagcaattaacagcatgtt |
227 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
39912795 |
atatgattgagcaattaacagcatgtt |
39912821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 39858720 - 39858938
Alignment:
| Q |
11 |
tgtaaaagtgtaattgatgat--gataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaa |
108 |
Q |
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||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| || ||||||| |||| ||| |
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| T |
39858720 |
tgtaagagtgtaactgatgatatgataccttgaaaacgttaaatgacgtctgctttttaacacggaaactcctcactttgtcaaggtctacgagatcaaa |
39858819 |
T |
|
| Q |
109 |
atatatatcctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattatgtgttatcagtataaataaataaaaatacaatctgatt |
208 |
Q |
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| T |
39858820 |
atatatgtcatttccaatttgttctgcaaggtcttcatctcgtaccaccttagaagtattatatgttatcagtataaataaataaaaatacaatctgatt |
39858919 |
T |
|
| Q |
209 |
gagcaattaacagcatgtt |
227 |
Q |
| |
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||||||||||||||||||| |
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| T |
39858920 |
gagcaattaacagcatgtt |
39858938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 39866350 - 39866554
Alignment:
| Q |
19 |
tgtaattgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcc |
118 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| ||| |||||| |||| ||||||||||| | |
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| T |
39866350 |
tgtaactgatgatgataccttgaaaatgttaaatgacatctgcttttgaacatggaaaatcctcactttgtcatagtctacgagatcaaaatatatatac |
39866449 |
T |
|
| Q |
119 |
tttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattatgtgttatcagtataaataaataaaaatacaatctgattgagcaattaa |
218 |
Q |
| |
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||||||| ||||| |||||||||||||||||||| |||| ||||||||| | | |||||||| ||||||| ||||||||||||||||||| |||| |
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| T |
39866450 |
tttccaacctgttttgcaaggtcttcatctcgtacaacctgagaagtattttttattatcagt----ataaatataaatacaatctgattgagccgttaa |
39866545 |
T |
|
| Q |
219 |
cagcatgtt |
227 |
Q |
| |
|
||||||||| |
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|
| T |
39866546 |
cagcatgtt |
39866554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 39899687 - 39899837
Alignment:
| Q |
17 |
agtgtaattgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatat |
116 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
39899687 |
agtgtaattgatgatgatacctttaaatcgttaaatgatttctgcctttgaacatagaaaatccccactttgtcatggtctacaagatcaaaatatatat |
39899786 |
T |
|
| Q |
117 |
cctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtat |
167 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||| |||||||||||||| |
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| T |
39899787 |
cctttccaatctgttttgcaaggtcttcgtctcgtaccacctaagaagtat |
39899837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 38967366 - 38967214
Alignment:
| Q |
17 |
agtgtaattgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||| ||||| ||| ||||||||||||||| |||||| |||| |
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| T |
38967366 |
agtgtaattgatgatgataccttgaaaacgtgaaa-gatgtctgcttctgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatat |
38967268 |
T |
|
| Q |
117 |
cctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattat |
170 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
38967267 |
cctttcctatctgttctgcaaggtcttcatcccgtgccacctaagaagtattat |
38967214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 37467676 - 37467810
Alignment:
| Q |
27 |
atgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaat |
126 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
37467676 |
atgatgataccttgaaaacgttaaatggtgtctgcttttgtacacggaaactccgcactttgtcatgttctacaagatcaaaatatatatcctttccaat |
37467775 |
T |
|
| Q |
127 |
ctgttctgcaaggtcttcatctcgtatcacctaag |
161 |
Q |
| |
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||||||| |||| |||||||| ||| |||||||| |
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| T |
37467776 |
ctgttctccaagatcttcatcccgtgccacctaag |
37467810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 39849351 - 39849489
Alignment:
| Q |
32 |
gataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgtt |
131 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||| |||||||||||||||| || |||||||||||| |||||||| ||| |||||||| |||| |
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|
| T |
39849351 |
gataccttgaaaacgttaaacgacgcctgcttttgaacacggaaactcctcactttatcaaggtctacaagatcaaaatataaatcatttccaatttgtt |
39849450 |
T |
|
| Q |
132 |
ctgcaaggtcttcatctcgtatcacctaagaagtattat |
170 |
Q |
| |
|
|||||| ||| |||||||||| |||||| |||||||||| |
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|
| T |
39849451 |
ctgcaaagtcctcatctcgtaccacctaggaagtattat |
39849489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 39869112 - 39869222
Alignment:
| Q |
73 |
gaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattatgt |
172 |
Q |
| |
|
|||||||| |||||| ||| ||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | |
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|
| T |
39869112 |
gaaactccccacttttccaaggtctacgagatcaaaacatatatcctttccaatctgttctgccaggtcttcatctcgtactacctaagaagtattatat |
39869211 |
T |
|
| Q |
173 |
gttatcagtat |
183 |
Q |
| |
|
||||||||||| |
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|
| T |
39869212 |
gttatcagtat |
39869222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 39734818 - 39734684
Alignment:
| Q |
27 |
atgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaat |
126 |
Q |
| |
|
||||||||||||||||| | ||||||| || | ||| ||||| | ||||| ||||||||| || |||| ||||||| ||||||||||||||||||||| |
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| T |
39734818 |
atgatgataccttgaaatctttaaatgtcgtattcttgggaacacgaaaactgctcactttgtcagggtcaacaagatcaaaatatatatcctttccaat |
39734719 |
T |
|
| Q |
127 |
ctgttctgcaaggtcttcatctcgtatcacctaag |
161 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |
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|
| T |
39734718 |
ctgttgtgcaaggtcttcatctcgtaccacctaag |
39734684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 39849530 - 39849571
Alignment:
| Q |
186 |
ataaataaaaatacaatctgattgagcaattaacagcatgtt |
227 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
39849530 |
ataaatataaatacaatctgattgagcaattaagagcatgtt |
39849571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 39727680 - 39727640
Alignment:
| Q |
27 |
atgatgataccttgaaaacgttaaatgatgtctgcttttga |
67 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
39727680 |
atgatgataccttgaaaacattaaatgacgtctgcttttga |
39727640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 36058012 - 36057875
Alignment:
| Q |
23 |
attgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttc |
122 |
Q |
| |
|
||||||| ||||||||||||||| ||||| | |||||||||||| ||| ||||||| ||||||||| | ||||||||||||| ||| || |||||||||| |
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|
| T |
36058012 |
attgatggtgataccttgaaaacattaaaaggtgtctgcttttgtacacggaaacttctcactttgtcgtggtctacaagatcaaagtagatatcctttc |
36057913 |
T |
|
| Q |
123 |
caatctgttctgcaaggtcttcatctcgtatcacctaa |
160 |
Q |
| |
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| ||||| || ||| ||||||||| ||| ||||||| |
|
|
| T |
36057912 |
ccatctgcccttcaatgtcttcatcccgtgccacctaa |
36057875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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