View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11057_high_2 (Length: 365)
Name: NF11057_high_2
Description: NF11057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11057_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 52367358 - 52367693
Alignment:
| Q |
18 |
agacaaagatcaagaagaaggaagatgaagaaaatccgtacacccagttttgtttaaagtaccacagtgagtgagtctcatctcatcttgcttttaatcg |
117 |
Q |
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| T |
52367358 |
agacaaagatcaagaagaaggaagatgaagaaaatccgtacacccagttttgtttaaagtaccacagtgagtgattctcatctcatcttgcttttaatcg |
52367457 |
T |
|
| Q |
118 |
tttcattcctctacaatcacattattcttcccaccccatcactaa-ttttttattaacacattctctctggaatgttcgattgatactgatataaattca |
216 |
Q |
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| T |
52367458 |
tttcattcctctacaatcacattattcttcccaccccatcactaatttttttattaacacattctctcttgaatgttcgattgatactgatataaattca |
52367557 |
T |
|
| Q |
217 |
attattatcatt----agataatactctttctcctcctaaccctatcggtaaccgtgaaattaatcttgaattcaatcctcacatatgggcgaagacaca |
312 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52367558 |
attattattattattaagataatactctttctcctcctaaccctatcggtaaccgtgaaattaatcttgaattcaatcctcacatatgggcgaagacaca |
52367657 |
T |
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| Q |
313 |
caacaacaacctcagccacaaccacaaggggtttct |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52367658 |
caacaacaacctcagccacaaccacaaggggtttct |
52367693 |
T |
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