View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11057_low_1 (Length: 437)
Name: NF11057_low_1
Description: NF11057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11057_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 56185405 - 56184987
Alignment:
| Q |
1 |
agatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatcatgaagctcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56185405 |
agatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatcatgaagctcc |
56185306 |
T |
|
| Q |
101 |
acagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataattata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56185305 |
acagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataattata |
56185206 |
T |
|
| Q |
201 |
tagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtattac |
300 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
56185205 |
tagatgaactaaaataaaaatattttggtttgtaaccacttgagttctaagtccttaataccttgtgtagcagataagttacatcattgatttgtattac |
56185106 |
T |
|
| Q |
301 |
aaggtctgagggtatctctgatgtcaatgtcctgcatttatgagaatacatgttagtttgtgaaaggattgtacagtgatttgttaatgaaataagcgct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
56185105 |
aaggtctgagggtatctctgatgtcaatgtcctgcatttataagaatacatgttagtttgtgaaaggattgtacagtga-ttgttaatgaaataagcgct |
56185007 |
T |
|
| Q |
401 |
gctgtgaatacctggtagct |
420 |
Q |
| |
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|||||||||||||||||||| |
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| T |
56185006 |
gctgtgaatacctggtagct |
56184987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 98 - 420
Target Start/End: Complemental strand, 31192036 - 31191715
Alignment:
| Q |
98 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataatt |
197 |
Q |
| |
|
|||||| ||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31192036 |
tccacaataaaaatctttgaatcactacaatcatagcaaagcctttggaggagtctacattttggaagaagggcaaactgcagataaaaagaaaataatt |
31191937 |
T |
|
| Q |
198 |
atatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtat |
297 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31191936 |
gtatagatgaactaaaatcaaaatattttggtttatatccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcgttgatctgtat |
31191837 |
T |
|
| Q |
298 |
tacaaggtctgagggtatctctgatgtcaatgtcctgcatttatgagaatacatgttagtttgtgaaaggattgtacagtgatttgttaatgaaataagc |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
31191836 |
aacaaggtatgagggtatctctgatgtcaatgtcctgcatttatgagaatacatgttagtttgtgaaaggattgtacagtga-ttgttaatgaaacaaat |
31191738 |
T |
|
| Q |
398 |
gctgctgtgaatacctggtagct |
420 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
31191737 |
gctgctgtgaatacctggtagct |
31191715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 98 - 420
Target Start/End: Original strand, 16807835 - 16808155
Alignment:
| Q |
98 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataatt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
16807835 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctctgttggagtctacattttggaagaagggcaaactacagataaaaagaaaataatt |
16807934 |
T |
|
| Q |
198 |
atatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtat |
297 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
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|
| T |
16807935 |
gtatagatgaactaaaatcaaaatattttggtttatatccacttgagttctaagtccttaataccttgtgtagcagataagtaacaccgttgatctgtat |
16808034 |
T |
|
| Q |
298 |
tacaaggtctgagggtatctctgatgtcaatgtcctgcatttatgagaatacatgttagtttgtgaaaggattgtacagtgatttgttaatgaaataagc |
397 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || | |
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| T |
16808035 |
tacaagatctgagggtatctctgatgtc-atgtcctgcatttatgagaatacatgttagtttgtgaaaggattgtacagtga-ttgttaacgaaacaaac |
16808132 |
T |
|
| Q |
398 |
gctgctgtgaatacctggtagct |
420 |
Q |
| |
|
|| | | |||||||||||||||| |
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|
| T |
16808133 |
gccgttatgaatacctggtagct |
16808155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 10015538 - 10015388
Alignment:
| Q |
11 |
ttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatcatgaagctccacagtaaaac |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| ||| || ||||| ||||||| |||||| | || || || |
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|
| T |
10015538 |
ttatgagcactaatgttgattgaaactccatagcaaaactttgcacaaagttcaaaagcctctgatccaccaggcatatcattaagctctagaggaacac |
10015439 |
T |
|
| Q |
111 |
tctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttg |
161 |
Q |
| |
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||| |||||| ||| |||| | ||||| |||||||| || || ||||||| |
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|
| T |
10015438 |
tcttagaatcattagtatcagaacaaagtctttgtagaaggccgcattttg |
10015388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 10021310 - 10021252
Alignment:
| Q |
4 |
tacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagtt |
62 |
Q |
| |
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|||||| |||| |||||||||||||||||||| |||||| || ||||||||||| |||| |
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|
| T |
10021310 |
tacaaaattataagcactaatgttgattgaaactccatagcagaacttagcacaaagtt |
10021252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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