View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11057_low_3 (Length: 319)
Name: NF11057_low_3
Description: NF11057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11057_low_3 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 16589509 - 16589203
Alignment:
| Q |
21 |
atcgcagtgttagtagtatctaataacaatgaatgagattctttcttttagttatgttgtgtgatttctcccacaattgttcatgttttacttgatttca |
120 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16589509 |
atcgcagtgtaagtagtatctaataacaatgaatgcgattctttctttaagttatgttgtgtgatttctcccacaattgttcatgttttacttgatttca |
16589410 |
T |
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| Q |
121 |
gtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgtcaccagatttcttctcggaggtttaaatggcgtgcttggaccagt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16589409 |
gtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgccaccagatttcttctcggaggtttaaatggcgtgcttggaccagt |
16589310 |
T |
|
| Q |
221 |
taaggtacatgtcataa-------------cttgttgcatctcattcaaatttcaatgtagataaatgtatttgacaaacttctgtatttaacaggccta |
307 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16589309 |
taaggtacatgtcataacttgcatgcataacttgttgcatctcattcaaatttcaatgtagataaatgtatttgacaaacttctgtatttaacaggccta |
16589210 |
T |
|
| Q |
308 |
tgctact |
314 |
Q |
| |
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||||||| |
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| T |
16589209 |
tgctact |
16589203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 16529413 - 16529295
Alignment:
| Q |
110 |
acttgatttcagtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgtcaccagatttcttctcggaggtttaaatggcgtg |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||| |
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| T |
16529413 |
acttgatttcagtgtcattttcaacacattatttggccttagtacgggttattggatggctattatcacgagatttcttctcggaagtttaaatggcgtg |
16529314 |
T |
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| Q |
210 |
cttggaccagttaaggtac |
228 |
Q |
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||||| ||||||||||||| |
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| T |
16529313 |
cttgggccagttaaggtac |
16529295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 16520896 - 16520780
Alignment:
| Q |
112 |
ttgatttcagtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgtcaccagatttcttctcggaggtttaaatggcgtgct |
211 |
Q |
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|||||||||||||| || |||||||| | || |||||||||||| |||||||||||||| || |||| ||||||||| | ||| ||||||||| | | |
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| T |
16520896 |
ttgatttcagtgtcgttctcaacacactttttggccttagtacgagtttttggatggctgttatcacaagatttcttttgggaactttaaatggtgcaat |
16520797 |
T |
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| Q |
212 |
tggaccagttaaggtac |
228 |
Q |
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||||||||| ||||||| |
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| T |
16520796 |
tggaccagtaaaggtac |
16520780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 26370826 - 26370706
Alignment:
| Q |
108 |
ttacttgatttcagtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgtcaccagatttcttctcggaggtttaaatggcg |
207 |
Q |
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|||||| |||||||| |||||||||||||| |||| |||||||| || |||||||||||||| || || | ||| |||| ||| |||||||||| |
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| T |
26370826 |
ttactttatttcagtatcattttcaacacactatttggccttagcacaagtttttggatggctgttacaacacggttttttcttggaagtttaaatggtt |
26370727 |
T |
|
| Q |
208 |
tgcttggaccagttaaggtac |
228 |
Q |
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||||||||||| | ||||||| |
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| T |
26370726 |
tgcttggaccaatgaaggtac |
26370706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 286 - 121
Alignment:
| Q |
62 |
tttcttttagttatgttgtgtgatttctcccacaattgttcatgttttacttgatttcagtgtcattttcaacacattattcggccttagtacgggtttt |
161 |
Q |
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||||||| |||||||||||| ||| |||| || |||| || |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
286 |
tttctttaagttatgttgtgggatgtctctcataattattgatgttt-acttgatttcagtgtcattttcaacacattatttggcctcagtacgggtttt |
188 |
T |
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| Q |
162 |
tggatggctattgtcaccagatttcttctcggaggtttaaatggcgtgcttggaccagttaaggtac |
228 |
Q |
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|||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
187 |
tggatggctattatcacgagatttcttctcggaagtttaaatggcgtgcttggaccagttaaggtac |
121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 2606519 - 2606639
Alignment:
| Q |
108 |
ttacttgatttcagtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgtcaccagatttcttctcggaggtttaaatggcg |
207 |
Q |
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||||||||||||||| |||| ||||||||| |||| |||||||| ||| |||||||||||||| || || | ||| |||| ||| |||||||||| |
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| T |
2606519 |
ttacttgatttcagtatcatcttcaacacactatttggccttagcacgagtttttggatggctgttacaacgcggttttttcttggatgtttaaatggtt |
2606618 |
T |
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| Q |
208 |
tgcttggaccagttaaggtac |
228 |
Q |
| |
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||||||||||| | ||||||| |
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| T |
2606619 |
tgcttggaccaatgaaggtac |
2606639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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