View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11058_high_12 (Length: 327)
Name: NF11058_high_12
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 1445632 - 1445939
Alignment:
| Q |
7 |
tacttacttacttacgttatcatacatattccgaataaaatgaaaatttacatgttgcataagcccttgaacatgaggttagttctctttctatctcaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1445632 |
tacttacttacttacgttatcatacatattccgaataaaatgaaaatttacatgttgcagaagcccttgaacatgaggttagttctctttctatctcaga |
1445731 |
T |
|
| Q |
107 |
tcgttttctgaagcaccaaattgacatagtttctaaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1445732 |
tcgttttctgaagcaccaaattgacatagtttctaaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaat |
1445831 |
T |
|
| Q |
207 |
ccaaagtccctcatagagcatgttttaaggcttagtgaaaggcatggtggaacaaattttggaagaacccagttttgacgatatacgaactcatgatccc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1445832 |
ccaaagtccctcatagagcatgttttaaggcttagtgaaaggcatggtggaacaaattttggaagaacccagttttgaccatatacgaactcatgatccc |
1445931 |
T |
|
| Q |
307 |
taatgctg |
314 |
Q |
| |
|
|||||||| |
|
|
| T |
1445932 |
taatgctg |
1445939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 12105718 - 12105575
Alignment:
| Q |
41 |
ataaaatgaaaatttacatgttgcataagcccttgaacatgaggttagttctctttctatctcagatcgttttctgaagcaccaaattgacatagtttct |
140 |
Q |
| |
|
||||| ||||| || |||||||||| |||| |||||||| ||||||| | ||||||||| ||||| |||| | ||||||||| ||||||||| ||||| |
|
|
| T |
12105718 |
ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct |
12105619 |
T |
|
| Q |
141 |
aaaactgatgaattgttcagaatatatgttgctaacatagtgtg |
184 |
Q |
| |
|
||||||| |||||| ||||||||| || ||||||||||| |||| |
|
|
| T |
12105618 |
aaaactgttgaattcttcagaataaattttgctaacataatgtg |
12105575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 270
Target Start/End: Original strand, 1459054 - 1459193
Alignment:
| Q |
128 |
tgacatagtttctaaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaatccaaagtccctcatagagcat |
227 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||| ||||||||| | |||||| | | |||| ||| |||||||| ||||| || || ||| |
|
|
| T |
1459054 |
tgacatagtttctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctgacg--gaag-tctggaaatccaatgtcccgcaaagtgcaa |
1459150 |
T |
|
| Q |
228 |
gttttaaggcttagtgaaaggcatggtggaacaaattttggaa |
270 |
Q |
| |
|
||| ||||| ||| | ||||||| | ||||||| ||||||||| |
|
|
| T |
1459151 |
gttgtaaggtttaataaaaggcaagatggaacagattttggaa |
1459193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 45810117 - 45810346
Alignment:
| Q |
40 |
aataaaatgaaaatttacatgttgcataagcccttgaacatgaggttagttctctttctatctcagatcgttttctgaagcaccaaattgacatagtttc |
139 |
Q |
| |
|
|||||| ||||| || |||| ||||| ||||||||| |||||| | || | | ||||||| | ||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
45810117 |
aataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatagtttc |
45810216 |
T |
|
| Q |
140 |
taaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaatccaaagtccctcatagagcatgttttaaggctt |
239 |
Q |
| |
|
||||||| || ||| ||||||||| | ||||||||||| || | | |||| | ||||||||| ||||||||| ||||| ||| || | ||| || |
|
|
| T |
45810217 |
taaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgaggttt |
45810316 |
T |
|
| Q |
240 |
agtgaaaggcatggtggaacaaattttgga |
269 |
Q |
| |
|
| ||||||||| | ||||||| |||||||| |
|
|
| T |
45810317 |
aatgaaaggcaagttggaacagattttgga |
45810346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 10116391 - 10116490
Alignment:
| Q |
47 |
tgaaaatttacatgttgcataagcccttgaacatgaggttagttctctttctatctcagatcgttttctgaagcaccaaattgacatagtttctaaaact |
146 |
Q |
| |
|
||||| ||||||||||| | ||||||||| |||||||| || |||||||||| | ||| ||||| | | | ||||| ||||||||||||||||||||| |
|
|
| T |
10116391 |
tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttctaaaact |
10116490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 965158 - 965276
Alignment:
| Q |
118 |
agcaccaaattgacatagtttctaaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaatccaaagtccct |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||| | ||||||| || |||||| |||| |||| | | |||| | |||||| || ||||||||| |
|
|
| T |
965158 |
agcaccacattgacatagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtccca |
965257 |
T |
|
| Q |
218 |
catagagcatgttttaagg |
236 |
Q |
| |
|
||||| ||| ||| ||||| |
|
|
| T |
965258 |
catagtgcaagttgtaagg |
965276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University