View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11058_high_14 (Length: 317)

Name: NF11058_high_14
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11058_high_14
NF11058_high_14
[»] chr3 (1 HSPs)
chr3 (9-298)||(31041525-31041814)
[»] chr1 (3 HSPs)
chr1 (119-214)||(6556605-6556700)
chr1 (117-202)||(4949036-4949121)
chr1 (117-146)||(48466041-48466070)
[»] chr2 (2 HSPs)
chr2 (116-157)||(39616012-39616053)
chr2 (116-214)||(7335729-7335827)
[»] chr4 (1 HSPs)
chr4 (117-177)||(181723-181783)
[»] chr8 (2 HSPs)
chr8 (112-178)||(34296066-34296130)
chr8 (116-188)||(32659793-32659865)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 31041525 - 31041814
Alignment:
Q  9 tgacgatccagggatcaaattgatagtgtattctttttgataggtcttcaactctagtgtactattaaactgctccatatgtgtaaccacttattctaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31041525 tgacgatccagggatcaaattgatagtgtattctttttgataggtcttcaactctagtgtactattaaactggtccatatgtgtaaccacttattctaaa 31041624  T
Q  109 tcagtcattatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagtttctaacatattgtccgaaggactgatatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041625 tcagtcattatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagtttctaacatattgtccgaaggactgatatg 31041724  T
Q  209 attaaagcataaaaatcagagacnnnnnnnaaataacttataatacaatgacatattcaagaacaccctacaaaatcagagacacgtttg 298  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041725 attaaagcataaaaatcagagactttttttaaataacttataatacaatgacatattcaagaacaccctacaaaatcagagacacgtttg 31041814  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 6556605 - 6556700
Alignment:
Q  119 tattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagtttctaacatattgtccgaaggactgatatgattaaa 214  Q
    |||||||||||||||||||||| || ||| |||||||||  | ||| ||||||||||||| |||| |||| | || ||| |||| |||||| ||||    
T  6556605 tattttaacaacttactatcaacttggtttttatatttaaccgcttactatcaatttagtctctagcatactctcggaatgactaatatgagtaaa 6556700  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 4949036 - 4949121
Alignment:
Q  117 tatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagtttctaacatattgtccgaaggact 202  Q
    ||||||||||||| ||||||| ||||| ||   ||||||||  | ||| || |||||||||| |||||||||||||| ||||||||    
T  4949036 tatattttaacaatttactattaatttcgtctctatatttaaccacttactctcaatttagtctctaacatattgtcagaaggact 4949121  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 48466041 - 48466070
Alignment:
Q  117 tatattttaacaacttactatcaatttagt 146  Q
    ||||||||||||||||||||||||||||||    
T  48466041 tatattttaacaacttactatcaatttagt 48466070  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 39616012 - 39616053
Alignment:
Q  116 ttatattttaacaacttactatcaatttagttattatattta 157  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  39616012 ttatattttaacaatttactatcaatttggttattatattta 39616053  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 7335729 - 7335827
Alignment:
Q  116 ttatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagtttctaacatattgtccgaaggactgatatgattaaa 214  Q
    ||||||||||||||| || ||||||||| ||| |||||||||    ||| ||| ||||||||||  |||||| ||||| ||| |||| ||| |||||||    
T  7335729 ttatattttaacaacctattatcaatttggttcttatatttaacaacttgctaacaatttagttcataacatgttgtcagaaagactaataggattaaa 7335827  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 181783 - 181723
Alignment:
Q  117 tatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttag 177  Q
    |||||||||||||||||||||||||||  ||  |||||||| || ||| ||||||||||||    
T  181783 tatattttaacaacttactatcaatttgattcctatatttaatcactttctatcaatttag 181723  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 34296066 - 34296130
Alignment:
Q  112 gtcattatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagt 178  Q
    |||| |||||||||||||||||||||||||||  || ||| |||||  ||||| |||||||||||||    
T  34296066 gtcactatattttaacaacttactatcaatttgattcttacattta--cccttactatcaatttagt 34296130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 32659793 - 32659865
Alignment:
Q  116 ttatattttaacaacttactatcaatttagttattatatttagtcccttcctatcaatttagtttctaacata 188  Q
    ||||||||||||||||||||||||| || ||   ||| ||||  ||||  |||||||||||||| ||||||||    
T  32659793 ttatattttaacaacttactatcaacttggtctctatgtttaacccctcactatcaatttagttcctaacata 32659865  T

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