View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11058_high_16 (Length: 265)
Name: NF11058_high_16
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8958050 - 8957805
Alignment:
| Q |
1 |
tttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttgaaagacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8958050 |
tttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcatgaaagacatg |
8957951 |
T |
|
| Q |
101 |
cttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaaactatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957950 |
cttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaaactatttt |
8957851 |
T |
|
| Q |
201 |
ctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957850 |
ctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaag |
8957805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8946017 - 8946129
Alignment:
| Q |
1 |
tttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttgaaagacatg |
100 |
Q |
| |
|
|||||| | |||||||||||||||||| || ||||| |||||| |||| |||||| ||||||||||||| ||||||||| || | |||||||||||| |
|
|
| T |
8946017 |
tttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttgaaagacata |
8946116 |
T |
|
| Q |
101 |
cttgcttttgaag |
113 |
Q |
| |
|
||||| |||||| |
|
|
| T |
8946117 |
tttgctattgaag |
8946129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 34962811 - 34963035
Alignment:
| Q |
12 |
atggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttgaaagacatgcttgcttttga |
111 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
34962811 |
atggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttagttccaaaaactgttttcatgaaagacatgcttgcaattga |
34962910 |
T |
|
| Q |
112 |
agtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaaactattttctgaaaagtat |
211 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||| | ||| ||||| ||||||| ||||| ||||| |||||||||||||| |||| || || |
|
|
| T |
34962911 |
ag---------tagagttactactcttgatgtaagctttgacaatttcaccatttattggattaacaaggatggttgcaaaactattttgtgaatagaat |
34963001 |
T |
|
| Q |
212 |
atgtttgtaacatttgtaataaaaacagccccaa |
245 |
Q |
| |
|
|||| || ||||||| ||| |||||||| |||| |
|
|
| T |
34963002 |
atgtctgagacatttgaaatcaaaacagctccaa |
34963035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21687180 - 21687374
Alignment:
| Q |
1 |
tttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttgaaagacatg |
100 |
Q |
| |
|
|||||| | |||||||||||||||||| || || ||||| |||||| || |||||||||| || ||||| || ||| |||||||||||||||||||| |
|
|
| T |
21687180 |
tttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaaagctgttttcttgaaagacatg |
21687279 |
T |
|
| Q |
101 |
cttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaaactatt |
198 |
Q |
| |
|
||||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||||||| | ||||| || ||||||||||| |||||||| |
|
|
| T |
21687280 |
tttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatttactggattaataatgatggatgggaaactatt |
21687374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 19375905 - 19375998
Alignment:
| Q |
12 |
atggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttgaaagacatgcttgc |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
19375905 |
atggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgttttcttgaaagacatgcttgc |
19375998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University