View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_high_23 (Length: 236)
Name: NF11058_high_23
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 37573735 - 37573651
Alignment:
| Q |
17 |
gcacaaataaaccatatggtgatgacatgttatatgatatgataaatgcaaaaacaaaagatgaaaagaaggtgtagcctgcgtg |
101 |
Q |
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| T |
37573735 |
gcacaaataaaccatatggtgatgacatgttatatgatatgataaatgcaaaaacaaaagatgaaaagaaggtgtagcgtgcgtg |
37573651 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 37573586 - 37573538
Alignment:
| Q |
182 |
ctgcactgcacaaaacggctacagcagaag---aagagacataacaaac |
227 |
Q |
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| T |
37573586 |
ctgcactgcacaaaacggctacagcagaagaagaagagacataacaaac |
37573538 |
T |
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