View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_high_3 (Length: 704)
Name: NF11058_high_3
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 210 - 693
Target Start/End: Complemental strand, 40360502 - 40360015
Alignment:
| Q |
210 |
ggaagatttttataccaaggatctccgagtttcagaatttattgcaccgaagctgatacaaggaaggaagaggaagaagaagaatgtaagagttcaaaca |
309 |
Q |
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| T |
40360502 |
ggaagatttttataccaaggatctccgagtttcagaatttattgcaccgaagctgatacaaggaaggaagaggaagaagaagaatgtaagagttcaaaca |
40360403 |
T |
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| Q |
310 |
ttgttgtcatgcaccaaaaatcacgtagtgctgacagtgttgttcaaagtgttgcagcaaggaaaacaaaaatctcaaacgaggtaatcaa----ctttc |
405 |
Q |
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| T |
40360402 |
ttgttgtcatgcaccaaaaatcacgtagtgctgacagtgttgttcaaagtgttgcagcaaggaaaacaaaaatctcaaacgaggtaatcaattaactttc |
40360303 |
T |
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| Q |
406 |
tattaaaatcttgttttaaattgcaatccacaaccgcaattattgcagtcacaataaatattcgataaaaccaaactcccatctaaagactaacattgtt |
505 |
Q |
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| T |
40360302 |
tcttaaaatattgttttaaattgcaatccacaaccgcaattattgcagtcacaataaatattcgataaaaccaaactcccatctaaagactaacattgtt |
40360203 |
T |
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| Q |
506 |
ctttgtttcaaataggtacctcagattgttgaaagtgaaacaattacaaagagaaaagggaataagaacaagaaatttgggaaagtgagaactctactaa |
605 |
Q |
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| T |
40360202 |
ccttgtttcaaataggtacctgagattgttgaaagtgaaacaattacaaagagaaaagggaataagaacaagaaatttgggaaagtgagaactctactaa |
40360103 |
T |
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| Q |
606 |
aggttaagtcatgctaccacccaatatcttcctgtacaggtgaacacagaagccgtcttgttgctgcaaaagcagcaaattgatcata |
693 |
Q |
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| T |
40360102 |
aggttaagtcatgctaccacccaatatcttcctgtacaggtgaacacagaagccgtcttgttgctgcaaaagcagcaaattgatcata |
40360015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 40360703 - 40360641
Alignment:
| Q |
18 |
gattcaaatgagaaagttgaggcagagaccaaaacagaggagggaaacattaaagggacagtg |
80 |
Q |
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| T |
40360703 |
gattcaaatgagaaagttgaggcagagaccaaaacagaggagggaaatattgaagggacagtg |
40360641 |
T |
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