View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_10 (Length: 351)
Name: NF11058_low_10
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 51856896 - 51856591
Alignment:
| Q |
20 |
gttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacagtttatct |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51856896 |
gttattttgaagttccaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacaggttatct |
51856797 |
T |
|
| Q |
120 |
tctagatctagttccctttctttattt----------------gtgctgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaac |
203 |
Q |
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| T |
51856796 |
tctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaac |
51856697 |
T |
|
| Q |
204 |
aagccactcttatattggttgttgattattaaacagggaacttaataataagacatgattct-gtgaaattggtcctgcaatgtgtgactttaatcaatc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51856696 |
aagccactcttatattggttgttgattattaaacagggaacataataataagacatgattctagtgaaattggtcctgcaatgtgtgactttaatcaatc |
51856597 |
T |
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| Q |
303 |
tcgttt |
308 |
Q |
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|||||| |
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| T |
51856596 |
tcgttt |
51856591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 51856710 - 51856664
Alignment:
| Q |
305 |
gtttgaagggtaacaagccactcatatattggttgttgattattaaa |
351 |
Q |
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| T |
51856710 |
gtttgaagggtaacaagccactcttatattggttgttgattattaaa |
51856664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 51856581 - 51856538
Alignment:
| Q |
292 |
tttaatcaatctcgtttgaagggtaacaagccactcatatattg |
335 |
Q |
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||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
51856581 |
tttaatcgatctagtttgaagggtaacaagccactcttatattg |
51856538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 51856569 - 51856538
Alignment:
| Q |
189 |
agtttgaagggtaacaagccactcttatattg |
220 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
51856569 |
agtttgaagggtaacaagccactcttatattg |
51856538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 8945940 - 8945724
Alignment:
| Q |
20 |
gttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacagtttatct |
119 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
8945940 |
gttattttgaagtttcaattataacggcttcaaagcacatcgtgaaggagctaaatgatttttagaacgacccttcattatcatgtagtacaggttatct |
8945841 |
T |
|
| Q |
120 |
tctagatctagttccctttcttt----------------atttgtgctgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaac |
203 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8945840 |
tctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttgatttttattattaaagtttgaagggtaac |
8945741 |
T |
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| Q |
204 |
aagccactcttatattg |
220 |
Q |
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||||||||||||||||| |
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| T |
8945740 |
aagccactcttatattg |
8945724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 43263146 - 43262898
Alignment:
| Q |
20 |
gttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacagtttatct |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||| ||||||| |||||| |
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| T |
43263146 |
gttattttgaagtttcaattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgtagaaggacccttcaacatcatgcagtacaggttatct |
43263047 |
T |
|
| Q |
120 |
tctagatctagttccctttcttt----------------atttgtgctgtgtt-aagaaaaattaaagtttaatttttattattaaagtttgaagggtaa |
202 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43263046 |
tctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaaaaaaaaagaaaagtttaatttttattattaaagtttgaagggtaa |
43262947 |
T |
|
| Q |
203 |
caagccactcttatattggttgttgattattaaacagggaacttaataa |
251 |
Q |
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||| ||||||| ||||||||||||||||||| |||||| ||| |||||| |
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| T |
43262946 |
caatccactctcatattggttgttgattattgaacaggcaacataataa |
43262898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 43262959 - 43262916
Alignment:
| Q |
305 |
gtttgaagggtaacaagccactcatatattggttgttgattatt |
348 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
43262959 |
gtttgaagggtaacaatccactctcatattggttgttgattatt |
43262916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 45480376 - 45480436
Alignment:
| Q |
249 |
taataagacatgattct-gtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
308 |
Q |
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||||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||| |
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| T |
45480376 |
taataagttatgattctagtcaaattggtactgcaacgtgtgactttaatcaatctcgttt |
45480436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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