View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_11 (Length: 349)
Name: NF11058_low_11
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 30494549 - 30494228
Alignment:
| Q |
13 |
gagatggtagaagctttattcgttagaggagtgaccgagacagggaatccaaatcgtcttagagaatctgaaatgatatcacgcgggtagttcagattga |
112 |
Q |
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| T |
30494549 |
gagatggtagaagctttattcgttggaggagtgaccgagacagggaatccaaatcgtcttagagaatctgaaatgatatcacgcgggtagttcagattga |
30494450 |
T |
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| Q |
113 |
caaggcctttgtaaagaggtcctataacttcttcatcatcatgatcacaatcttctttttcttgtcgtccttctttggatgttttatgtaaaattttgtt |
212 |
Q |
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| T |
30494449 |
caaggccttcgtaaagaggtcctataacttcttcatcatcatgatcacaatcttctttttcttgtcgtccttctttggatgttttatgtaaaattttgtt |
30494350 |
T |
|
| Q |
213 |
ctttcgctgcgctttgaactcttgatcaggtccactatatccaattgccttccatgaagggttgnnnnnnncttcatctacctgaaaatgaaagtgttct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30494349 |
ctttcgctgcgctttgaactcttgatcaggtccactatatccaattgccttccatgaagggttgtttttttcttcatctacctgaaaatgaaagtgttct |
30494250 |
T |
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| Q |
313 |
ggcataatgagtacattgttat |
334 |
Q |
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| T |
30494249 |
ggcataatgagtacattgttat |
30494228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 10450914 - 10451002
Alignment:
| Q |
49 |
gagacagggaatccaaatcgtcttagagaatctgaaatgatatcacgcgggtagttcagattgacaaggcctttgtaaagaggtcctat |
137 |
Q |
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| T |
10450914 |
gagacggggaatccaaatcgtcttagagtgtcgacaatgatgtctctcggatagttgagatggacgagccctttgtaaagaggtcctat |
10451002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 10451072 - 10451132
Alignment:
| Q |
210 |
gttctttcgctgcgctttgaactcttgatcaggtccactatatccaattgccttccatgaa |
270 |
Q |
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| T |
10451072 |
gttctttaactgagctttgaattctggatcaggtccacagtatccaattgctttccatgaa |
10451132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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