View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11058_low_12 (Length: 348)

Name: NF11058_low_12
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11058_low_12
NF11058_low_12
[»] chr6 (8 HSPs)
chr6 (227-333)||(1083768-1083874)
chr6 (153-198)||(24782012-24782057)
chr6 (139-202)||(24836267-24836330)
chr6 (139-202)||(29274297-29274360)
chr6 (144-202)||(2206534-2206592)
chr6 (143-232)||(31583644-31583731)
chr6 (153-202)||(6310292-6310341)
chr6 (155-195)||(10150327-10150367)
[»] chr5 (13 HSPs)
chr5 (197-270)||(33116549-33116622)
chr5 (136-225)||(29116975-29117064)
chr5 (161-202)||(40120081-40120122)
chr5 (146-202)||(32969185-32969241)
chr5 (147-202)||(37526267-37526322)
chr5 (147-202)||(37588428-37588483)
chr5 (147-202)||(37690705-37690760)
chr5 (139-174)||(40048376-40048411)
chr5 (144-225)||(985577-985658)
chr5 (153-202)||(14295459-14295508)
chr5 (153-202)||(42569048-42569097)
chr5 (89-137)||(11040928-11040976)
chr5 (150-202)||(12595808-12595860)
[»] chr2 (7 HSPs)
chr2 (139-202)||(39929806-39929869)
chr2 (144-200)||(656847-656903)
chr2 (139-202)||(1493581-1493644)
chr2 (139-202)||(10143111-10143174)
chr2 (159-202)||(23143046-23143089)
chr2 (159-202)||(23554836-23554879)
chr2 (182-224)||(31228863-31228905)
[»] chr8 (5 HSPs)
chr8 (144-202)||(31884538-31884596)
chr8 (139-200)||(38874585-38874646)
chr8 (139-174)||(11188251-11188286)
chr8 (139-202)||(12361131-12361194)
chr8 (153-203)||(14280468-14280518)
[»] chr7 (3 HSPs)
chr7 (139-202)||(28165030-28165093)
chr7 (144-198)||(39591539-39591593)
chr7 (146-202)||(23918903-23918959)
[»] chr3 (12 HSPs)
chr3 (144-202)||(21862243-21862302)
chr3 (144-203)||(49586983-49587042)
chr3 (144-202)||(1395615-1395673)
chr3 (153-202)||(2318596-2318646)
chr3 (135-193)||(48364956-48365014)
chr3 (145-198)||(10101548-10101601)
chr3 (145-198)||(10212473-10212526)
chr3 (153-202)||(20874372-20874421)
chr3 (153-202)||(43116496-43116545)
chr3 (157-202)||(52440730-52440775)
chr3 (144-200)||(42808923-42808979)
chr3 (144-200)||(42809245-42809301)
[»] chr1 (9 HSPs)
chr1 (144-202)||(49517014-49517072)
chr1 (139-202)||(4200168-4200231)
chr1 (139-202)||(15360833-15360896)
chr1 (139-202)||(44032067-44032130)
chr1 (139-232)||(24146298-24146390)
chr1 (153-202)||(27738248-27738297)
chr1 (157-202)||(30371105-30371150)
chr1 (153-202)||(47877075-47877124)
chr1 (146-194)||(14737781-14737829)
[»] chr4 (10 HSPs)
chr4 (145-202)||(19154691-19154748)
chr4 (145-202)||(30024645-30024702)
chr4 (153-202)||(45128378-45128427)
chr4 (144-201)||(54327518-54327575)
chr4 (139-174)||(40709476-40709511)
chr4 (144-202)||(49219083-49219141)
chr4 (153-202)||(4071835-4071884)
chr4 (153-202)||(24929446-24929495)
chr4 (153-202)||(28232498-28232547)
chr4 (153-202)||(53626729-53626778)
[»] scaffold0024 (1 HSPs)
scaffold0024 (85-202)||(27455-27578)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 1083768 - 1083874
Alignment:
Q  227 taaaaatggcctatggaaagaggaagattgtgtatttaccttgttagagtccgatgcacaaaatccacattttggtgaagcctttaaacacgttgtgcag 326  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1083768 taaaaatggcctatggaaagaggaagattgcatatttaccttgttagagtcagatgcacaaaatccacattttggtgaagcctttaaacacgttgtgcag 1083867  T
Q  327 tcccatc 333  Q
    |||||||    
T  1083868 tcccatc 1083874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 24782012 - 24782057
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataag 198  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||    
T  24782012 tttctataacaaaagataaaatcaaatcaaattgttttcatataag 24782057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 24836330 - 24836267
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||||| ||||||||||||||||||||||  | || |||||||||| ||||| ||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactat 24836267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 29274360 - 29274297
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||| | |||||||| |||||||||||||  | || |||||||||||||||||||||    
T  29274360 ttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 2206534 - 2206592
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||| ||| ||||||||||||||||||  | | |||||||||| |||||||||||    
T  2206534 tataagttatttttataacaaaagataaaataaagtataattgtttttatataagctat 2206592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 31583644 - 31583731
Alignment:
Q  143 ttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctatcatgcaaagtttatggaaataagttaaaaa 232  Q
    ||||||| | |||||||||||| |||||||||  | || ||||||||||  ||||||||||  | |||| ||||||||||||||| ||||    
T  31583644 ttataagctatttctataacaagagataaaatgaagtcaaattgttttc--ataagctatcccgaaaagcttatggaaataagttgaaaa 31583731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 6310341 - 6310292
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||| || |  | ||||||||||||||||||||||||    
T  6310341 tttctataacaaaagatgaagtaaagtctaattgttttcatataagctat 6310292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 10150367 - 10150327
Alignment:
Q  155 tctataacaaaagataaaatccaatctaattgttttcatat 195  Q
    |||||||||||| |||||||| |||| ||||||||||||||    
T  10150367 tctataacaaaatataaaatcaaatcaaattgttttcatat 10150327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 33116622 - 33116549
Alignment:
Q  197 agctatcatgcaaagtttatggaaataagttaaaaatggcctatggaaagaggaagattgtgtatttaccttgt 270  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  33116622 agctatcatgcaaattttatggaaatgagttaaaaatggcctatggaaagaggaagattgcatatttaccttgt 33116549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 29117064 - 29116975
Alignment:
Q  136 tgattatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctatcatgcaaagtttatggaaataag 225  Q
    ||||||| |||| ||| ||||||||||||||||||||||  | || || ||||||| ||||||||||| || |||| ||||| |||||||    
T  29117064 tgattatgtatatgttatttctataacaaaagataaaataaagtcaaactgttttcgtataagctatcctgaaaagcttatgcaaataag 29116975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 40120081 - 40120122
Alignment:
Q  161 acaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  40120081 acaaaagataaaatcaaatcaaattgttttcatataagctat 40120122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 32969241 - 32969185
Alignment:
Q  146 taagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||||||||||||||||||||||||  | || |||| |||| |||||||||||    
T  32969241 taagttgtttctataacaaaagataaaataaagtcaaattatttttatataagctat 32969185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 37526322 - 37526267
Alignment:
Q  147 aagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||| ||||||||| ||||||||||||| |||| ||  |||||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctat 37526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 37588483 - 37588428
Alignment:
Q  147 aagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||| ||||||||| ||||||||||||| |||| ||  |||||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctat 37588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 37690760 - 37690705
Alignment:
Q  147 aagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||| ||||||||| ||||||||||||| |||| ||  |||||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctat 37690705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 40048411 - 40048376
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaat 174  Q
    |||| |||||||||||||||||||||||||||||||    
T  40048411 ttatgtataagttgtttctataacaaaagataaaat 40048376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 985577 - 985658
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctatcatgcaaagtttatggaaataag 225  Q
    |||| ||| |||| |||||||||||||||||  | || || |||||||| ||||||||||||| | ||  ||||||||||||    
T  985577 tatatgttatttccataacaaaagataaaataaagtcaaactgttttcacataagctatcatgaagagactatggaaataag 985658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 14295459 - 14295508
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||||||  | || || ||||||||||||||||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactgttttcatataagctat 14295508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 42569097 - 42569048
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||| |||||||||||||  | ||||||||||||| ||||||||||    
T  42569097 tttctatagcaaaagataaaataaagtctaattgttttcgtataagctat 42569048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 11040928 - 11040976
Alignment:
Q  89 tttggttaaacaacttgattaagcgattatagcatacattcttatcatg 137  Q
    ||||| |||||||||| ||||||||  ||||||||| ||||||||||||    
T  11040928 tttggataaacaacttaattaagcgcctatagcataaattcttatcatg 11040976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 12595860 - 12595808
Alignment:
Q  150 ttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||||||||||||||||||||  | |  |||||||||||||||| ||||    
T  12595860 ttgtttctataacaaaagataaaataaagttaaattgttttcatataaactat 12595808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 39929806 - 39929869
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||| ||  ||||||||||||||||||| |||| ||||||||| |||||||||||    
T  39929806 ttatttataagttattgttataacaaaagataaaatcaaatcaaattgtttttatataagctat 39929869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 656903 - 656847
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagct 200  Q
    |||||| | ||||||||||||||||||||||  |||| |||||||||| ||||||||    
T  656903 tataagctatttctataacaaaagataaaatataatcaaattgttttcgtataagct 656847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 1493644 - 1493581
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||  | |||||||||||| |||||||||  | |||| |||||||||||||||||||    
T  1493644 ttatttataaactctttctataacaatagataaaataaagtctagttgttttcatataagctat 1493581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 10143111 - 10143174
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||||| ||||||||||||||||||||||  | || || |||||| |||||||||||    
T  10143111 ttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctat 10143174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 23143089 - 23143046
Alignment:
Q  159 taacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||    
T  23143089 taacaaaagataaaatcaaatcaaattgttttcttataagctat 23143046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 23554879 - 23554836
Alignment:
Q  159 taacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||    
T  23554879 taacaaaagataaaatcaaatcaaattgttttcttataagctat 23554836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 31228905 - 31228863
Alignment:
Q  182 aattgttttcatataagctatcatgcaaagtttatggaaataa 224  Q
    ||||||||||||||||| ||||||| | |||||||||||||||    
T  31228905 aattgttttcatataagttatcatggagagtttatggaaataa 31228863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 31884538 - 31884596
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||| |||||||||||||| |||||||| |||  |||||||||||||||||||||    
T  31884538 tataagttatttctataacaaaatataaaatcaaattgaattgttttcatataagctat 31884596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 38874585 - 38874646
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagct 200  Q
    |||| |||||||||||||| |||| |||||||||||| | || |||| ||||||||||||||    
T  38874585 ttatgtataagttgtttctgtaactaaagataaaatcgagtcaaattcttttcatataagct 38874646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 11188286 - 11188251
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaat 174  Q
    |||| |||||||||||||||||||||||||||||||    
T  11188286 ttatgtataagttgtttctataacaaaagataaaat 11188251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 12361131 - 12361194
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||||| |||||||||  |||||||||||  | || |||||||||||||||||||||    
T  12361131 ttatatataagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctat 12361194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 14280518 - 14280468
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctatc 203  Q
    |||||||| |||||||||||||  |||  ||||||||||||||||||||||    
T  14280518 tttctatagcaaaagataaaattaaattaaattgttttcatataagctatc 14280468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 28165030 - 28165093
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||||| ||||||||||||||||||||||  | || ||||||||| |||||||||||    
T  28165030 ttatgtataagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctat 28165093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 39591593 - 39591539
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataag 198  Q
    |||||||| ||||||||||||||||||||||  | || |||||||||||||||||    
T  39591593 tataagttatttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 23918903 - 23918959
Alignment:
Q  146 taagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||| | ||||| ||||||||||||||  | || |||||||||||||||||||||    
T  23918903 taagttatctctattacaaaagataaaataaagtcaaattgttttcatataagctat 23918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 21862302 - 21862243
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaa-tctaattgttttcatataagctat 202  Q
    |||||| ||||||||| |||||||||||||| ||| || |||||||||||||||||||||    
T  21862302 tataagctgtttctattacaaaagataaaatacaagtcaaattgttttcatataagctat 21862243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 49587042 - 49586983
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctatc 203  Q
    |||||| | ||||||||||||||||||||||  | || || |||||||||||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctatc 49586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 1395615 - 1395673
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||| | ||||||||||||||||||||||  | || |||| ||||||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 2318596 - 2318646
Alignment:
Q  153 tttctataacaa-aagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||| ||||    
T  2318596 tttctataacaacaagataaaatcaaatcaaattgttttcatataaactat 2318646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 48365014 - 48364956
Alignment:
Q  135 atgattatttataagttgtttctataacaaaagataaaatccaatctaattgttttcat 193  Q
    |||||||| |||||||| |||| |||||||||||||||||  | || ||||||||||||    
T  48365014 atgattatgtataagttatttcgataacaaaagataaaataaagtcaaattgttttcat 48364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 10101601 - 10101548
Alignment:
Q  145 ataagttgtttctataacaaaagataaaatccaatctaattgttttcatataag 198  Q
    ||||||| ||||||||||||||||||||||  | |  |||||||||||||||||    
T  10101601 ataagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 10212526 - 10212473
Alignment:
Q  145 ataagttgtttctataacaaaagataaaatccaatctaattgttttcatataag 198  Q
    ||||||| ||||||||||||||||||||||  | |  |||||||||||||||||    
T  10212526 ataagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 20874421 - 20874372
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||| ||||||| |||||| |||| ||||||||||||||||| ||||    
T  20874421 tttctatgacaaaagctaaaatacaatataattgttttcatataaactat 20874372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 43116545 - 43116496
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||||||| |||| ||   ||||||||||||||||    
T  43116545 tttctataacaaaagataaaatcaaatcaaacaattttcatataagctat 43116496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 52440775 - 52440730
Alignment:
Q  157 tataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||||| |||||||| |||| ||||||||||| |||||||||    
T  52440775 tataacaaaatataaaatcaaatcaaattgttttcaaataagctat 52440730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 42808923 - 42808979
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagct 200  Q
    |||||| ||||||||||||||||||||||||  | |  ||||||||| |||||||||    
T  42808923 tataagctgtttctataacaaaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 42809245 - 42809301
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagct 200  Q
    |||||| | ||||||||||||||||||||||  | |  |||||||||||||||||||    
T  42809245 tataagctatttctataacaaaagataaaatatagttaaattgttttcatataagct 42809301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 49517014 - 49517072
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||| ||||||||||||||||||||||  | || |||||||||||| ||||||||    
T  49517014 tataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctat 49517072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 4200168 - 4200231
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||||| ||| ||||||||||||||||||  | || | |||||||||||||||||||    
T  4200168 ttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctat 4200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 15360833 - 15360896
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| ||| |||| ||||||||||||||||||||||  | || || ||||||||||||||||||    
T  15360833 ttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 15360896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 44032130 - 44032067
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| ||||||  |||||||||||||||| ||||||  | || |||||||||||||||||||||    
T  44032130 ttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagctat 44032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 24146390 - 24146298
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctatcatgcaaagtttatggaaataagttaaaaa 232  Q
    |||| |||||||| ||||||||||||||| | ||||  |||| || | |||||||||| |||||| |  | |||||||||||||||| ||||||    
T  24146390 ttatgtataagttatttctataacaaaag-tcaaatgaaatcaaactattttcatatacgctatccttgagagtttatggaaataagctaaaaa 24146298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 27738297 - 27738248
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||| |||||||||||||||  | || |||||||||||||||||||||    
T  27738297 tttctacaacaaaagataaaataaagtcaaattgttttcatataagctat 27738248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 30371105 - 30371150
Alignment:
Q  157 tataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||  | || |||||||||||||||||||||    
T  30371105 tataacaaaagataaaataaactcaaattgttttcatataagctat 30371150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 47877075 - 47877124
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||| |||||||||||||||||  |||| |||||||||||||||| ||||    
T  47877075 tttcaataacaaaagataaaataaaatcaaattgttttcatataaactat 47877124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 14737829 - 14737781
Alignment:
Q  146 taagttgtttctataacaaaagataaaatccaatctaattgttttcata 194  Q
    |||||| ||||||||||||||||||||||  | || |||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 19154691 - 19154748
Alignment:
Q  145 ataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||| |||||| ||||||||| |||||| |||| ||||| |||||||||||||||    
T  19154691 ataagttatttctaaaacaaaagaaaaaatcaaatcaaattgctttcatataagctat 19154748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 30024645 - 30024702
Alignment:
Q  145 ataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||| ||||||||||||||||||||||  | |  |||||||||||||||||||||    
T  30024645 ataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctat 30024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 45128427 - 45128378
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||||||| |||| |||| || |||||||||||||    
T  45128427 tttctataacaaaagataaaatcaaatcaaattattctcatataagctat 45128378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 54327575 - 54327518
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagcta 201  Q
    ||||||||||||||||||||||||||||||   | || || |||||||||||||||||    
T  54327575 tataagttgtttctataacaaaagataaaacaaagtcaaactgttttcatataagcta 54327518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 40709511 - 40709476
Alignment:
Q  139 ttatttataagttgtttctataacaaaagataaaat 174  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40709511 ttatttataagctgtttctataacaaaagataaaat 40709476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 49219083 - 49219141
Alignment:
Q  144 tataagttgtttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||| |||||||||||||| |||||||  | || |||| ||||||||||||||||    
T  49219083 tataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctat 49219141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 4071835 - 4071884
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||||||  | || |||| ||||||||||||||||    
T  4071835 tttctataacaaaagataaaataaagtcaaattattttcatataagctat 4071884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 24929446 - 24929495
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||||||  | ||||| |||||||||| |||||||    
T  24929446 tttctataacaaaagataaaataaagtctaactgttttcataaaagctat 24929495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 28232498 - 28232547
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    |||||||| |||||||||||||| |||| |||| ||| ||||||||||||    
T  28232498 tttctatagcaaaagataaaatcaaatcaaattatttccatataagctat 28232547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 53626729 - 53626778
Alignment:
Q  153 tttctataacaaaagataaaatccaatctaattgttttcatataagctat 202  Q
    ||||||||||||||||||||||  | || || ||||||||||||||||||    
T  53626729 tttctataacaaaagataaaataaattcaaaatgttttcatataagctat 53626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 27455 - 27578
Alignment:
Q  85 cctgtttggttaaacaacttgattaagcgattatagcatacattcttatcatga------ttatttataagttgtttctataacaaaagataaaatccaa 178  Q
    ||||||||| |||||||||| | ||| || ||||||||||   ||||||||||       |||| |||||||| ||||||||||| ||||||||||  |     
T  27455 cctgtttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaag 27554  T
Q  179 tctaattgttttcatataagctat 202  Q
    || |||||||||||||||| ||||    
T  27555 tcaaattgttttcatataaactat 27578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University