View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_14 (Length: 320)
Name: NF11058_low_14
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 8958198 - 8958496
Alignment:
| Q |
5 |
gcacttttgaaatgagcacacggtgatttgatcccttccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatatta |
104 |
Q |
| |
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|||||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958198 |
gcacttttgaaaggagcacacggtgattggagccctgccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatatta |
8958297 |
T |
|
| Q |
105 |
aagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958298 |
aagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgt |
8958397 |
T |
|
| Q |
205 |
tggtgttcaagattatgttaatcttctttgtgcacttaactactcacnnnnnnncatcactgccatcacaagatcttcttcgaatgattgctctgaacc |
303 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958398 |
tggtgtacaagattatgttaatcttctttgtgcacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaacc |
8958496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 8945826 - 8945632
Alignment:
| Q |
51 |
ggtcggcaattatgacaacgtcggacataattgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcattggg |
150 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||| ||| | |||| ||| ||||||||| |||||||||| |
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| T |
8945826 |
ggtcggcaattatgacaacatcaaacatatatgataatactaaggaacatatcaaagacattgaaaaaggtaatgaagttgcaactcctcttgcattggg |
8945727 |
T |
|
| Q |
151 |
agctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgttcaagattatgttaatcttctttgtgcacttaact |
245 |
Q |
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| T |
8945726 |
agctggttatgttgatcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaact |
8945632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 8963212 - 8963452
Alignment:
| Q |
5 |
gcacttttgaaatgagcacacggtgatttgatcccttccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatatta |
104 |
Q |
| |
|
|||||||||||| ||||||| | ||||| || ||| | || ||| |||||||||| |||||||| || |||||| ||||||| |||||||||| ||| | |
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| T |
8963212 |
gcacttttgaaaggagcacatgctgattggagcccgacagctattaggtcggcaatgatgacaacatcagacatatttgataacactaaggaacttatca |
8963311 |
T |
|
| Q |
105 |
aagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgt |
204 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| | || || |||| ||||||||||||||||||| |||||||| | |
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|
| T |
8963312 |
aagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatat |
8963411 |
T |
|
| Q |
205 |
tggtgttcaagattatgttaatcttctttgtgcacttaact |
245 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
8963412 |
tggtgtacaagattatgttaattttctttgtgcacttaact |
8963452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 8974608 - 8974906
Alignment:
| Q |
5 |
gcacttttgaaatgagcacacggtgatttgatcccttccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatatta |
104 |
Q |
| |
|
|||||||||||| ||||| | ||||| || |||| | || ||| |||| ||||| |||||||| || |||||| |||||||||||||||||| || | |
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|
| T |
8974608 |
gcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaactcataa |
8974707 |
T |
|
| Q |
105 |
aagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgt |
204 |
Q |
| |
|
||||||||||||| | ||| || | |||||| ||||||||| |||||||||||| | || || || | ||||||| ||||||| ||| |||||||||| |
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|
| T |
8974708 |
aagacattggaaaaggtaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgt |
8974807 |
T |
|
| Q |
205 |
tggtgttcaagattatgttaatcttctttgtgcacttaactactcacnnnnnnncatcactgccatcacaagatcttcttcgaatgattgctctgaacc |
303 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||| | ||| ||||||| ||| |||||||||||| | |||||||| ||| |||| |
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|
| T |
8974808 |
tggtgtacaagattatgtcaatcttctttgtgcactcaacttcacacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaacc |
8974906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 9948342 - 9948103
Alignment:
| Q |
5 |
gcacttttgaaatgagcacacggtgatttgatcccttccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatatta |
104 |
Q |
| |
|
|||||||||||| ||||||| | ||||| || |||| | || || |||| |||||||||||||| || |||| |||||||| ||||||||||||| | |
|
|
| T |
9948342 |
gcacttttgaaaggagcacatgctgattgga-ccctgcagctataaggtcagcaattatgacaacatcaaccatatttgataatgctaaggaacatatca |
9948244 |
T |
|
| Q |
105 |
aagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgt |
204 |
Q |
| |
|
||||||| ||| | | ||| |||| ||||||||| ||||||| |||||| || ||||| || | | |||||| |||||||| |||||| ||||||| || |
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| T |
9948243 |
aagacatcggagaaggtaacaaagttgcaactcctcttgcattaggagctagttatgttgatactactagagcgcttgaccccggtcttctttatgacgt |
9948144 |
T |
|
| Q |
205 |
tggtgttcaagattatgttaatcttctttgtgcacttaact |
245 |
Q |
| |
|
||||| |||||||||||||||||||| | || |||||||| |
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|
| T |
9948143 |
tggtgcacaagattatgttaatcttctctatggacttaact |
9948103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 9949424 - 9949368
Alignment:
| Q |
189 |
gtcttatttatgatgttggtgttcaagattatgttaatcttctttgtgcacttaact |
245 |
Q |
| |
|
||||| |||||||||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
9949424 |
gtcttgtttatgatgttggtgtaagacattatcttaatcttctttgtgcacttaact |
9949368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 47 - 303
Target Start/End: Complemental strand, 34962610 - 34962357
Alignment:
| Q |
47 |
attcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcat |
146 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| |||||||| |||||||||| || ||||||||||||| || || ||||||||| |||||||||| |
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|
| T |
34962610 |
attcggtcggcaataatgacaacatcagacatatttgataattctaaggaacaaatcaaagacattggaacagacaa---agcagcaacaccttttgcat |
34962514 |
T |
|
| Q |
147 |
tgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgttcaagattatgttaatcttctttgtgcacttaacta |
246 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| || |
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|
| T |
34962513 |
tgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttgtgcacttaaata |
34962414 |
T |
|
| Q |
247 |
ctcacnnnnnnncatcactgccatcacaagatcttcttcgaatgattgctctgaacc |
303 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||| |||||||| ||| |||| |
|
|
| T |
34962413 |
ctcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaacc |
34962357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 51 - 303
Target Start/End: Complemental strand, 21686989 - 21686737
Alignment:
| Q |
51 |
ggtcggcaattatgacaacgtcggacataattgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcattggg |
150 |
Q |
| |
|
||||||||||||||||||| || |||||| | || ||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||| |
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|
| T |
21686989 |
ggtcggcaattatgacaacatcagacatattagacaatactaaggaacatatcaaagacattggaaatggtaacagagcagcaactccttttgcattggg |
21686890 |
T |
|
| Q |
151 |
agctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgttcaagattatgttaatcttctttgtgcacttaactactca |
250 |
Q |
| |
|
|||||||||| |||| || |||||||||||||| ||||||||| |||||||| | ||||| ||||||||| |||||||||||||||||||||||| | || |
|
|
| T |
21686889 |
agctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatcggtgtacaagattatattaatcttctttgtgcacttaacttcaca |
21686790 |
T |
|
| Q |
251 |
cnnnnnnncatcactgccatcacaagatcttcttcgaatgattgctctgaacc |
303 |
Q |
| |
|
| ||||| |||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
21686789 |
caaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaacc |
21686737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 19375692 - 19375585
Alignment:
| Q |
59 |
attatgacaacgtcggacataattgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcattgggagctggtc |
158 |
Q |
| |
|
||||||||||| || |||||||| || ||||||| ||| ||| |||||||||||||| | ||| ||| ||||||| ||||||||||||||| |||| |
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|
| T |
19375692 |
attatgacaacatcagacataatagacaatactacaaaacttatgaaagacattggaaaaggtaacaaaattgcaactctttttgcattgggagccggtc |
19375593 |
T |
|
| Q |
159 |
atgttaat |
166 |
Q |
| |
|
||| |||| |
|
|
| T |
19375592 |
atgctaat |
19375585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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