View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_16 (Length: 291)
Name: NF11058_low_16
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 50140777 - 50140519
Alignment:
| Q |
16 |
actcgcaattgggg-ttgggtagctaaactgatgtgagttaaacgataagaagttgaagatcttaaatttaaatccgacaaatgagtaaatattaatcta |
114 |
Q |
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| T |
50140777 |
actcgcaattgggggttgggtagctaaattgatgtgagttaaacgataagaagttggagatcttaaatttaaacccgacaaatgaggaaatattaatcta |
50140678 |
T |
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| Q |
115 |
acaactaacatttttcattcaaaaaagaatcacaaactcacaaatcaaaatgaccttttactccannnnnnnnnnnaaaaataaaacgtgataggtcacc |
214 |
Q |
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| T |
50140677 |
acaacaaacatttatcattcaaaaaagaatcacaaactcacaaatcaaaatgaccttttactcca--tttttttttaaaaataaaacgtgataggtcacc |
50140580 |
T |
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| Q |
215 |
atctaatagtttaatcatataattgtaattatatttcatagtgttggatatgactcatagt |
275 |
Q |
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| T |
50140579 |
atctaatagtttaatcatataattgtaattatatttcacagtgttggatatgactcatagt |
50140519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 44751978 - 44751944
Alignment:
| Q |
91 |
gacaaatgagtaaatattaatctaacaactaacat |
125 |
Q |
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| T |
44751978 |
gacaaatgagtaaatattaatctaaccactaacat |
44751944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 17079986 - 17080025
Alignment:
| Q |
84 |
taaatccgacaaatgagtaaatattaatctaacaactaac |
123 |
Q |
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| T |
17079986 |
taaacccgacaaatgagtaaatattaatgtaacaactaac |
17080025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 9834665 - 9834623
Alignment:
| Q |
98 |
gagtaaatattaatctaacaactaacatttttcattcaaaaaa |
140 |
Q |
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| T |
9834665 |
gagtaaatattaacctaacaactaacatatgtcattcaaaaaa |
9834623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 12020125 - 12020170
Alignment:
| Q |
95 |
aatgagtaaatattaatctaacaactaacatttttcattcaaaaaa |
140 |
Q |
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| T |
12020125 |
aatgagtaaatattaatctaactattaacatttgccattcaaaaaa |
12020170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 13380474 - 13380506
Alignment:
| Q |
91 |
gacaaatgagtaaatattaatctaacaactaac |
123 |
Q |
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| T |
13380474 |
gacaaaagagtaaatattaatctaacaactaac |
13380506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 18148807 - 18148762
Alignment:
| Q |
91 |
gacaaatgagtaaatattaatctaacaactaacatttttcattcaa |
136 |
Q |
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| T |
18148807 |
gacaaatgagtaaatattattctaataattaacatttgtcattcaa |
18148762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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