View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_18 (Length: 264)
Name: NF11058_low_18
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 51856527 - 51856304
Alignment:
| Q |
11 |
agacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaat |
110 |
Q |
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| T |
51856527 |
agacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaat |
51856428 |
T |
|
| Q |
111 |
aggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctatttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856427 |
aggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctatttt |
51856328 |
T |
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| Q |
211 |
cccttttgacaatgtagatactta |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
51856327 |
cccttttgacaatgtagatactta |
51856304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 8945713 - 8945490
Alignment:
| Q |
11 |
agacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaat |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
8945713 |
agacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaat |
8945614 |
T |
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| Q |
111 |
aggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctatttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945613 |
aggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctatttt |
8945514 |
T |
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| Q |
211 |
cccttttgacaatgtagatactta |
234 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8945513 |
cccttttgacaatgtagatactta |
8945490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
23 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggca |
122 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
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| Q |
123 |
ttacagaaaaataaaat |
139 |
Q |
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||||||||||| ||||| |
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| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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