View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_2 (Length: 717)
Name: NF11058_low_2
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 395
Target Start/End: Original strand, 16547365 - 16547735
Alignment:
| Q |
28 |
aaaccaatcatcctcttgcactcctacacactccctgacacctcatcaatcttacaactaactagacgcctttaaaccacca-ttctaatacgccaacac |
126 |
Q |
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| T |
16547365 |
aaaccaattgtcctcatgcactcctacacactctctgacaccaaataagtatttcaaccaaccagacgccttgaaaccaccccttctaatacgcccacac |
16547464 |
T |
|
| Q |
127 |
aaatcacttttaaaaaatttaatttttaccaaaatcatctaattcaaaatccgttttaagcatg-taaaaccaaacacatttaattttaatcaaattata |
225 |
Q |
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| T |
16547465 |
aaatcactt----aaaattcaattttaaccaaaatcatcctattcaaaatcaattttaaacatggtaaaaccaaacacatttaactttaatcaaattata |
16547560 |
T |
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| Q |
226 |
tttcccaaaatnnnnnnnn----tagcattcaaca-ttagtacaactcaaacactcatcctccaacattagttcactgttcccttagtttggttccatct |
320 |
Q |
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||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16547561 |
ttttccaaaataaaaaaaaaaaatagcattcaacacttagtacaactcaaacactcatcctccaacattagttcactgttcccttagtttggttccatct |
16547660 |
T |
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| Q |
321 |
tgatcatcattaattacagtttccttgtttctcactctaccttcaacacttcaattcaatgccagcaactttacc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16547661 |
tgatcatcattaattacagtttccttgtttctcactctaccttcaacacttcaattcaatgccagcaactttacc |
16547735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 510 - 654
Target Start/End: Original strand, 16547849 - 16547993
Alignment:
| Q |
510 |
ttctaaatatccccctttatattccacagtccacattcaaaaattctaatacctctttttgataaatcaaacactaatcacagaattttcaaacataatg |
609 |
Q |
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| T |
16547849 |
ttctaaatacccccctttatattccacagtccacattcaaaaattctaatacctctttttaataaatcaaacactaatcacagaattttcaaacataatg |
16547948 |
T |
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| Q |
610 |
taaaaaacaaacaacacagcttcatactcttccaacaaacaacac |
654 |
Q |
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| T |
16547949 |
taaaaaacaaacaacacagcttcatactcttccaacaaacaacac |
16547993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 615 - 694
Target Start/End: Original strand, 16547982 - 16548061
Alignment:
| Q |
615 |
aacaaacaacacagcttcatactcttccaacaaacaacactacttgtctcttccattcattccttccacacataaaataa |
694 |
Q |
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| T |
16547982 |
aacaaacaacacagcttcatactcttccaacaaacaacactacttgtctcttccattcattccttccacacataaaataa |
16548061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 481
Target Start/End: Original strand, 16547790 - 16547820
Alignment:
| Q |
451 |
tgaatggagcagctacaccaatactacttcc |
481 |
Q |
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| T |
16547790 |
tgaatggagcagctacaccaatactacttcc |
16547820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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