View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11058_low_30 (Length: 216)

Name: NF11058_low_30
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11058_low_30
NF11058_low_30
[»] chr8 (1 HSPs)
chr8 (17-206)||(31911284-31911473)
[»] chr4 (1 HSPs)
chr4 (17-82)||(46694357-46694423)
[»] chr2 (1 HSPs)
chr2 (17-82)||(8230441-8230508)
[»] chr7 (1 HSPs)
chr7 (17-82)||(40253909-40253975)
[»] chr5 (2 HSPs)
chr5 (17-82)||(3498749-3498815)
chr5 (17-78)||(6536864-6536926)
[»] chr3 (1 HSPs)
chr3 (17-82)||(54025729-54025796)
[»] chr1 (1 HSPs)
chr1 (17-70)||(50074082-50074137)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 31911284 - 31911473
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataatttttattttgggtagccttggctacctcatggctcatgttataagaggactacgctcctggttat 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31911284 aaatataaaaacataccaacccattcaagaataatttttattttgggtagccttggctacctcatggctcatgttataagaggaccacgctcctggttat 31911383  T
Q  117 gactatggagttacatagtgtgtgccgcacgcttcgtgaagccagacaacttcacctctcactcctcaaaaccggtaatctgcattcatc 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31911384 gactatggagttacatagtgtgtgccgcacgattcgtgaagccagacaacttcacctctcactcctcaaaaccggtaatctgcattcatc 31911473  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 46694357 - 46694423
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataattttta-ttttgggtagccttggctacctcatg 82  Q
    |||||||||| ||||||||   |||||||||||||||||| ||||| ||||||| ||||||||||||    
T  46694357 aaatataaaaacataccaatttattcaagaataatttttatttttgagtagcctcggctacctcatg 46694423  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 8230441 - 8230508
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataat--ttttattttgggtagccttggctacctcatg 82  Q
    |||||||||| |||||||||  |||||||||||||  |||| ||| |||||||| |||||||||||||    
T  8230441 aaatataaaaacataccaacatattcaagaataatacttttttttggggtagccatggctacctcatg 8230508  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 40253909 - 40253975
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataatttttattttggg-tagccttggctacctcatg 82  Q
    |||||||||| |||||||||  ||||||||| ||| ||| ||||||| ||||| |||||||||||||    
T  40253909 aaatataaaaacataccaacatattcaagaacaatattttttttggggtagccatggctacctcatg 40253975  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 3498749 - 3498815
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataat-ttttattttgggtagccttggctacctcatg 82  Q
    |||||||||| |||||||||  |||||||||||||  ||| ||| |||||||| |||||||||||||    
T  3498749 aaatataaaaacataccaacatattcaagaataatactttttttggggtagccatggctacctcatg 3498815  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 6536864 - 6536926
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataatttttatttt-gggtagccttggctacct 78  Q
    |||||||||| |||||| | | ||||||||||||| |||||||| |||||||| |||||||||    
T  6536864 aaatataaaaacatacctaacgattcaagaataatatttattttggggtagccatggctacct 6536926  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 54025796 - 54025729
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaataatttttatttt--gggtagccttggctacctcatg 82  Q
    |||||||||| |||| |||| |||| |||||||||  | |||||  ||||||||||||||||||||||    
T  54025796 aaatataaaaacatatcaactcattaaagaataataataatttttggggtagccttggctacctcatg 54025729  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 50074082 - 50074137
Alignment:
Q  17 aaatataaaatcataccaacccattcaagaata--atttttattttgggtagcctt 70  Q
    |||||| ||| |||| |||||||||||||||||  |||||| ||||||||||||||    
T  50074082 aaatatgaaaacataacaacccattcaagaataatattttttttttgggtagcctt 50074137  T

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