View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_33 (Length: 203)
Name: NF11058_low_33
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 5329665 - 5329491
Alignment:
| Q |
10 |
aggagcagagaccaatactcaatcaatctcannnnnnncaattctatatgccaccacaaaattagtgttaattatcttgttttaatagatcaaattcatt |
109 |
Q |
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| T |
5329665 |
aggatcagaaaccaatactcaatcaatctcatttttt-caattctatatgcctccacaaaattagtgttaattatcttgtcttaatagatcaaattaatt |
5329567 |
T |
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| Q |
110 |
ccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattat |
185 |
Q |
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| T |
5329566 |
ccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattat |
5329491 |
T |
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