View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11058_low_4 (Length: 508)
Name: NF11058_low_4
Description: NF11058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11058_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 99 - 508
Target Start/End: Complemental strand, 41676158 - 41675749
Alignment:
| Q |
99 |
gaagtactcacccaatcaacaccttctctatactcatggaaaaaaccaacttcttgcgcgcctccaaagcaaaatacattgatagggctaccaagatcaa |
198 |
Q |
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| T |
41676158 |
gaagtactcacccaatcaacaccttctctatactcatggaaaaaaccaacttcttgcgcgcctccaaagcaaaatacattgatagggctaccaagatcaa |
41676059 |
T |
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| Q |
199 |
ctgcgccagaaaacttactatcagcggcagtaccatgtatgtatctaggagagataaccataacacggtgtccgcgacccgccagtgctattggcaaaga |
298 |
Q |
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| T |
41676058 |
ctgcaccagaaaacttactatcagcggcagtaccatgtatgtatctaggagagataaccataacacggtggccgcgacccgccagtgctattggcaaaga |
41675959 |
T |
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| Q |
299 |
accacaaacatctgccaggccaccggtcttagaatacggtgcagcttcagatgtaacaaaaacaatgttgcgggttactatagtttgagccttctcgtct |
398 |
Q |
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| T |
41675958 |
accacaaacatctgcaaggccaccggtcttagaatacggtgcagcttcagatgtaacaaaaacaatgttgcgggttactatagtttgagccttctcgtct |
41675859 |
T |
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| Q |
399 |
tctgcattcccaatctctggtttttcaacttcatcgctccttaaattcccttgagtttcagcagttttccctgcatgtaatgctcccataaaatcttcat |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675858 |
tctgcattcccaatctctggtttttcaacttcatcgctccttaaattcccttgagtttcagcagttttccctgcatgtaatgctcccataaaatcttcat |
41675759 |
T |
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| Q |
499 |
gactagtcaa |
508 |
Q |
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| T |
41675758 |
gacaagtcaa |
41675749 |
T |
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